Detailed information NTG0103932

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QUF32_RS02440
• Genome accession: NZ_AP028128
• Coordinates: 510901..511887 (+)
• Length: 328 a.a.
• NCBI ID: WP_020429689.1
• Uniprot ID: A0AAX2LR86
• Organism: Vibrio fluvialis strain IDH05335
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 505901..516887

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QUF32_RS02405 (KKIDH5335_04250)	ftsB	505970..506251 (+)	282	WP_020330423.1	cell division protein FtsB	-
QUF32_RS02410 (KKIDH5335_04260)	ispD	506248..506958 (+)	711	WP_171933335.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QUF32_RS02415 (KKIDH5335_04270)	ispF	506961..507437 (+)	477	WP_020330425.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QUF32_RS02420 (KKIDH5335_04280)	truD	507469..508515 (+)	1047	WP_286236036.1	tRNA pseudouridine(13) synthase TruD	-
QUF32_RS02425 (KKIDH5335_04290)	surE	508508..509275 (+)	768	WP_020330427.1	5'/3'-nucleotidase SurE	-
QUF32_RS02430 (KKIDH5335_04300)	-	509268..509894 (+)	627	WP_020429685.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QUF32_RS02435 (KKIDH5335_04310)	nlpD	509894..510829 (+)	936	WP_020429687.1	murein hydrolase activator NlpD	-
QUF32_RS02440 (KKIDH5335_04320)	rpoS	510901..511887 (+)	987	WP_020429689.1	RNA polymerase sigma factor RpoS	Regulator
QUF32_RS02445 (KKIDH5335_04330)	mutS	511956..514517 (-)	2562	WP_222740963.1	DNA mismatch repair protein MutS	-
QUF32_RS02450 (KKIDH5335_04340)	pncC	514602..515090 (+)	489	WP_020330432.1	nicotinamide-nucleotide amidase	-
QUF32_RS02455 (KKIDH5335_04350)	recA	515263..516315 (+)	1053	WP_024374201.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37678.46 Da
• Isoelectric Point: 4.4184

>NTDB_id=103932 QUF32_RS02440 WP_020429689.1 510901..511887(+) (rpoS) [Vibrio fluvialis strain IDH05335]
MSISNTATKVEEFDFDPETANLAEVEEELATNNDQSEEIREEFDASTKSLDATQMYLSEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAVELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDINNSD
PEVSTQDDDIRDSLVAWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQGLNME
SLFNVEND

Nucleotide

• Length: 987 bp

>NTDB_id=103932 QUF32_RS02440 WP_020429689.1 510901..511887(+) (rpoS) [Vibrio fluvialis strain IDH05335]
ATGAGTATCAGCAATACAGCCACTAAAGTCGAAGAGTTTGATTTTGATCCTGAAACAGCGAATCTTGCTGAGGTCGAAGA
AGAACTTGCTACCAACAATGACCAGTCAGAAGAGATTCGTGAAGAGTTTGACGCTTCAACGAAAAGCCTCGATGCAACTC
AGATGTATCTGAGTGAGATTGGTTTCTCACCACTGTTAACCGCCGAAGAAGAAGTACTCTACGCTCGCCGTGCTCTGCGT
GGCGATGAAGCTGCGCGCAAACGCATGATTGAGAGTAACTTACGTCTGGTGGTCAAGATTTCCCGCCGTTATAGCAATCG
TGGTCTGGCACTGCTTGACCTGATTGAAGAGGGTAACCTCGGCCTGATTCGTGCGGTAGAGAAATTCGACCCAGAACGCG
GTTTCCGTTTTTCGACTTACGCCACCTGGTGGATTCGTCAGACCATTGAACGTGCGCTGATGAACCAAACCCGTACCATT
CGTTTACCGATTCATGTGGTGAAAGAGCTGAATATTTACCTGCGTACTGCACGTGAACTGTCTCAGAAACTGGACCACGA
ACCAACCGCAGAAGAAATAGCGGTTGAACTGGATAAGCCAGTGGATGACGTCAGCAAAATGCTGCGCCTGAATGAGCGTA
TCAGCTCTGTGGACACTCCGATTGGCGGTGACGGTGATAAGGCGTTGCTGGATATCATTCCGGACATCAACAACTCTGAT
CCTGAAGTCTCCACGCAAGATGACGACATTCGTGATTCGTTGGTGGCTTGGCTGGATGAGCTCAATCCGAAACAGAAAGA
AGTGCTGGCACGCCGTTTTGGCTTGTTGGGCTATGAACCTTCGACGCTGGAAGAAGTGGGCCGCGAGATTAATCTGACTC
GTGAACGTGTACGCCAAATTCAGGTTGAAGGTCTGCGCCGTCTGAGAGAGATCCTGATGAAACAAGGCCTGAATATGGAA
TCGCTGTTCAACGTGGAAAACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	87.126	100	0.887