Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   ACDJ02_RS03195 Genome accession   NZ_CP167777
Coordinates   648793..649674 (+) Length   293 a.a.
NCBI ID   WP_151724679.1    Uniprot ID   -
Organism   Acinetobacter ursingii strain E5131942     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 643793..654674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDJ02_RS03170 (ACDJ02_03170) wrbA 644985..645575 (+) 591 WP_151724682.1 NAD(P)H:quinone oxidoreductase -
  ACDJ02_RS03175 (ACDJ02_03175) - 645756..646130 (-) 375 WP_004995062.1 hypothetical protein -
  ACDJ02_RS03180 (ACDJ02_03180) - 646325..646900 (-) 576 WP_004985432.1 xanthine phosphoribosyltransferase -
  ACDJ02_RS03185 (ACDJ02_03185) - 646987..647703 (-) 717 WP_151724681.1 DUF3108 domain-containing protein -
  ACDJ02_RS03190 (ACDJ02_03190) - 647859..648554 (-) 696 WP_151788514.1 hypothetical protein -
  ACDJ02_RS03195 (ACDJ02_03195) tonB2 648793..649674 (+) 882 WP_151724679.1 energy transducer TonB Machinery gene
  ACDJ02_RS03200 (ACDJ02_03200) - 649852..652038 (+) 2187 WP_252718368.1 TonB-dependent siderophore receptor -
  ACDJ02_RS03205 (ACDJ02_03205) ybeY 652092..652571 (-) 480 WP_151724678.1 rRNA maturation RNase YbeY -
  ACDJ02_RS03210 (ACDJ02_03210) - 652650..653732 (-) 1083 WP_372375972.1 PhoH family protein -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 33317.01 Da        Isoelectric Point: 9.6548

>NTDB_id=1039309 ACDJ02_RS03195 WP_151724679.1 648793..649674(+) (tonB2) [Acinetobacter ursingii strain E5131942]
MFKKNVGYFPVIRHWWQDSILLAAIAIAIVLHIFVLLIHFAMPAPSDTATKEIAVTIRPSPDKVEHADFLAQSDQKGSGK
FHDSHRMSSDMPKAMPDQSSGESPTQTLDHIQQQRELKFEEKVLMTVLSWQKQAEENQRKKAQDDLQSQFQAKAAMVASI
EAQYLQRQQNFSRQQRIKTVDGIQAKQDASAAYLNKFREKVELYGNRYYPDEAKQQNLAGEVRLMVVLNAQGGIRAIRLI
ESSGHPILDEAAKASVRRGAPFGRFDVGMKDISELRIIRTWKFNPAQAEFEVH

Nucleotide


Download         Length: 882 bp        

>NTDB_id=1039309 ACDJ02_RS03195 WP_151724679.1 648793..649674(+) (tonB2) [Acinetobacter ursingii strain E5131942]
ATGTTTAAAAAAAATGTAGGTTATTTTCCAGTGATTCGACACTGGTGGCAGGATTCTATTTTATTGGCTGCAATTGCAAT
CGCAATCGTGCTACATATTTTCGTTTTGCTGATTCATTTTGCGATGCCAGCTCCATCGGATACAGCGACCAAAGAAATTG
CTGTGACCATTCGACCAAGCCCCGATAAAGTTGAGCATGCTGATTTTCTGGCACAGTCAGATCAAAAGGGCTCTGGCAAA
TTCCACGATTCTCACCGAATGTCGAGTGATATGCCTAAAGCCATGCCTGATCAGAGTTCAGGTGAGTCACCAACACAAAC
CCTTGACCATATTCAGCAACAACGTGAGCTAAAATTTGAAGAAAAAGTGCTGATGACTGTTTTGAGCTGGCAAAAACAAG
CTGAAGAAAATCAACGGAAAAAAGCACAAGATGATTTACAAAGTCAGTTTCAGGCTAAAGCAGCAATGGTTGCTAGTATT
GAAGCGCAATATTTACAACGTCAGCAAAACTTTAGTCGTCAGCAACGGATTAAAACAGTAGATGGTATTCAAGCCAAGCA
AGATGCATCAGCAGCCTATTTAAATAAGTTCCGCGAAAAAGTGGAACTTTATGGCAACCGTTATTATCCCGATGAAGCCA
AACAACAAAATTTAGCAGGCGAAGTTCGACTCATGGTGGTGCTGAATGCACAAGGTGGGATTCGTGCGATTCGTTTAATT
GAAAGTTCTGGACACCCAATACTGGATGAAGCTGCCAAAGCATCGGTACGCCGTGGTGCACCGTTTGGTCGTTTTGATGT
AGGAATGAAGGATATTTCCGAATTACGGATTATCCGAACATGGAAATTTAACCCAGCACAGGCTGAGTTTGAAGTGCATT
GA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(206-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

76.871

100

0.771

Multiple sequence alignment