Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AACH31_RS09990 Genome accession   NZ_AP028127
Coordinates   2058292..2058867 (-) Length   191 a.a.
NCBI ID   WP_161832856.1    Uniprot ID   -
Organism   Turicibacter faecis strain TC023     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2053292..2063867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH31_RS09975 (T23_18630) - 2054510..2055427 (-) 918 WP_262950844.1 YybS family protein -
  AACH31_RS09980 (T23_18640) - 2057616..2057783 (+) 168 WP_202618810.1 hypothetical protein -
  AACH31_RS09985 (T23_18650) rpsR 2058012..2058245 (-) 234 WP_006784586.1 30S ribosomal protein S18 -
  AACH31_RS09990 (T23_18660) ssbA 2058292..2058867 (-) 576 WP_161832856.1 single-stranded DNA-binding protein Machinery gene
  AACH31_RS09995 (T23_18670) rpsF 2058899..2059186 (-) 288 WP_161832855.1 30S ribosomal protein S6 -
  AACH31_RS10000 (T23_18680) ychF 2059503..2060603 (-) 1101 WP_161832854.1 redox-regulated ATPase YchF -
  AACH31_RS10005 (T23_18690) - 2060753..2061157 (+) 405 WP_161832853.1 NUDIX domain-containing protein -
  AACH31_RS10010 (T23_18700) - 2061171..2061944 (-) 774 WP_262951223.1 A24 family peptidase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20624.54 Da        Isoelectric Point: 4.7172

>NTDB_id=103921 AACH31_RS09990 WP_161832856.1 2058292..2058867(-) (ssbA) [Turicibacter faecis strain TC023]
MINRVVLVGRLTRDPELKYTTNGIANLRFSIAVNRTFTSQNGERQADFINCVAWRSQAENMAKFLRKGSLIGVEGRIETG
SYQAQDGSMRYTTDVVCDSVQFLEPRSATADRGNFGTQPSHDFSGGNPFGGGYGGTPSFPQQAPTPNNYGGGNPFGATQS
VDQGFANPGSNFNSEPDFSSTINISDDDLPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=103921 AACH31_RS09990 WP_161832856.1 2058292..2058867(-) (ssbA) [Turicibacter faecis strain TC023]
ATGATTAATCGCGTTGTTTTAGTAGGGCGATTAACACGTGATCCAGAACTAAAGTATACGACTAATGGAATCGCTAATTT
GCGATTTAGTATTGCGGTTAATCGTACTTTCACTAGTCAAAATGGAGAACGTCAAGCAGACTTCATTAATTGTGTAGCAT
GGCGAAGCCAAGCTGAGAATATGGCGAAGTTTTTACGTAAAGGTTCTTTAATTGGTGTTGAAGGACGTATAGAAACAGGT
AGCTATCAAGCTCAGGATGGATCTATGCGGTACACAACAGATGTTGTGTGTGATAGCGTTCAATTCTTAGAACCTCGTTC
GGCAACTGCTGATCGTGGAAACTTTGGAACTCAACCATCTCACGATTTTAGTGGAGGAAATCCATTTGGAGGTGGATATG
GTGGAACACCATCATTCCCACAACAAGCACCAACACCTAATAATTATGGTGGAGGAAATCCATTTGGAGCCACTCAAAGT
GTAGATCAAGGTTTTGCTAATCCAGGATCAAATTTTAATAGTGAGCCGGATTTTAGCTCAACAATTAATATTTCAGATGA
TGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.259

100

0.508
  ssb Latilactobacillus sakei subsp. sakei 23K

47.644

100

0.476

Multiple sequence alignment