Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACCQ22_RS15555 Genome accession   NZ_CP167236
Coordinates   3691086..3692480 (+) Length   464 a.a.
NCBI ID   WP_042773941.1    Uniprot ID   -
Organism   Xanthomonas axonopodis pv. desmodiirotundifolii strain NCPPB 885     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3686086..3697480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ22_RS15535 (ACCQ22_15535) - 3686329..3686673 (-) 345 WP_218502950.1 ribbon-helix-helix domain-containing protein -
  ACCQ22_RS15540 (ACCQ22_15540) sucD 3686844..3687719 (-) 876 WP_029820064.1 succinate--CoA ligase subunit alpha -
  ACCQ22_RS15545 (ACCQ22_15545) sucC 3687744..3688913 (-) 1170 WP_007965356.1 ADP-forming succinate--CoA ligase subunit beta -
  ACCQ22_RS15550 (ACCQ22_15550) - 3689145..3690758 (+) 1614 WP_372167542.1 PAS domain-containing sensor histidine kinase -
  ACCQ22_RS15555 (ACCQ22_15555) pilR 3691086..3692480 (+) 1395 WP_042773941.1 sigma-54 dependent transcriptional regulator Regulator
  ACCQ22_RS15560 (ACCQ22_15560) pilB 3692884..3694593 (-) 1710 WP_372167543.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACCQ22_RS15565 (ACCQ22_15565) - 3694687..3695142 (-) 456 WP_372166330.1 pilin -
  ACCQ22_RS15570 (ACCQ22_15570) - 3695249..3695686 (-) 438 WP_372166331.1 pilin -
  ACCQ22_RS15575 (ACCQ22_15575) pilC 3696036..3697292 (+) 1257 WP_372166332.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50192.59 Da        Isoelectric Point: 6.5718

>NTDB_id=1039077 ACCQ22_RS15555 WP_042773941.1 3691086..3692480(+) (pilR) [Xanthomonas axonopodis pv. desmodiirotundifolii strain NCPPB 885]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAPGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAVPNGGAA
AEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1039077 ACCQ22_RS15555 WP_042773941.1 3691086..3692480(+) (pilR) [Xanthomonas axonopodis pv. desmodiirotundifolii strain NCPPB 885]
ATGAACGAACCCAAAAGCGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCAT
GGGCTTGCGCATCAGCACCGCGGCGAACCTGGCCGAGGCGCGCGAGTTGCTGGCCAACAACCCCTACGATCTGTGCCTGA
CCGACATGCGGTTGCCGGACGGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTACCCGCAGACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGT
CGACATCGGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAATCGCGACCGTCCCGCTCCGCCACCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGGGACTCCAGTGCCATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCACGCACCATCCACGAACAAGGCGC
ACGCGCCCCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAATTGATGGAAAGCGAATTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGAC
GAAGTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGACCGGTCGGCGC
ATCCAGCGAATCGCTGGTGGATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGGCATGACCTGTACTACCGCATCAACGTAATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCG
CAGCTGGCCGCTGCCATCATCGCGCGCCTGGCGCACAGCCATGGCCGCCCCATTCCGCTGCTGACCCAGTCGGCGCTCGA
CGCATTGAATCACTACGGCTTCCCAGGCAACGTACGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCTCACGGCGGCCACCGTCTGGCTGTCCCCAACGGAGGTGCCGCG
GCCGAGCCGCGCGAAGCCGTCGTGGACATCGACCCGGCCTCAGCCGCGCTGCCGTCCTACATCGAGCAACTGGAGCGCGC
CGCGATCCAGAAGGCACTGGAAGAAAACCGCTGGAACAAGACCAAGACTGCGGCGCAGCTGGGCATCACGTTTCGCGCGC
TGCGTTACAAGTTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491

Multiple sequence alignment