Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACCQ21_RS05895 Genome accession   NZ_CP167232
Coordinates   1343567..1345021 (-) Length   484 a.a.
NCBI ID   WP_011348337.1    Uniprot ID   -
Organism   Xanthomonas axonopodis pv. desmodiigangetici strain NCPPB 577     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1338567..1350021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ21_RS05875 (ACCQ21_05875) pilC 1339010..1340266 (-) 1257 WP_057685777.1 type II secretion system F family protein Machinery gene
  ACCQ21_RS05880 (ACCQ21_05880) pilE 1340593..1341033 (+) 441 WP_078590287.1 pilin Machinery gene
  ACCQ21_RS05885 (ACCQ21_05885) - 1341111..1341545 (+) 435 WP_078590286.1 pilin -
  ACCQ21_RS05890 (ACCQ21_05890) pilB 1341609..1343345 (+) 1737 WP_122272420.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACCQ21_RS05895 (ACCQ21_05895) pilR 1343567..1345021 (-) 1455 WP_011348337.1 sigma-54 dependent transcriptional regulator Regulator
  ACCQ21_RS05900 (ACCQ21_05900) - 1345288..1346901 (-) 1614 WP_218502939.1 PAS domain-containing sensor histidine kinase -
  ACCQ21_RS05905 (ACCQ21_05905) sucC 1347133..1348302 (+) 1170 WP_007965356.1 ADP-forming succinate--CoA ligase subunit beta -
  ACCQ21_RS05910 (ACCQ21_05910) sucD 1348327..1349202 (+) 876 WP_029820064.1 succinate--CoA ligase subunit alpha -
  ACCQ21_RS05915 (ACCQ21_05915) - 1349373..1349717 (+) 345 WP_008577787.1 ribbon-helix-helix domain-containing protein -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52491.26 Da        Isoelectric Point: 6.8289

>NTDB_id=1039034 ACCQ21_RS05895 WP_011348337.1 1343567..1345021(-) (pilR) [Xanthomonas axonopodis pv. desmodiigangetici strain NCPPB 577]
MGRDLLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAVPNGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=1039034 ACCQ21_RS05895 WP_011348337.1 1343567..1345021(-) (pilR) [Xanthomonas axonopodis pv. desmodiigangetici strain NCPPB 577]
GTGGGCCGCGACCTGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCTTGCGCATCAGCACCG
CGGCGAACCTGGCCGAGGCGCGCGAGTTGCTGGCCAACAACCCCTACGATCTGTGCCTGACCGACATGCGGTTGCCGGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTACCCGCAGACACCGGTGGCGATGATCACCGCCTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAATCGCGACCGTCCCGCTCCGCCACCGCCGCCACCGGAACAGGCCAGCCGC
CTGCTCGGGGACTCCAGTGCCATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCG
TGCCGGTCAACTGCGGCGCCATTCCCGCCGAATTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTACCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGACCGGTCGGCGCATCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTAATTGAGCTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCTGCCATCAT
CGCGCGCCTGGCGCACAGCCATGGCCGCCCCATTCCGCTGCTGACCCAGTCGGCGCTCGACGCATTGAATCACTACGGCT
TCCCAGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCCACC
GACCTGCGCCTGCCCGCTCACGGCGGCCACCGTCTGGCCGTCCCCAACGGAGGTGCCGCGGCCGAACCGCGCGAAGCCGT
CGTCGACATCGACCCGGCCTCAGCCGCGCTGCCGTCCTACATCGAGCAACTGGAGCGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCGGCGCAGCTGGGCATCACGTTTCGCGCGCTGCGTTACAAGTTGAAGAAG
CTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Response regulator receiver domain (Response_reg)

(28-134)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

95.661

0.603
  pilR Acinetobacter baumannii strain A118

49.138

95.868

0.471

Multiple sequence alignment