Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACB496_RS07565 Genome accession   NZ_CP167172
Coordinates   1642427..1643053 (+) Length   208 a.a.
NCBI ID   WP_100780904.1    Uniprot ID   -
Organism   Lelliottia nimipressuralis strain SKB.4e     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1637427..1648053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB496_RS07545 (ACB496_07545) - 1637824..1639584 (-) 1761 WP_371974867.1 AAA family ATPase -
  ACB496_RS07550 (ACB496_07550) matP 1639771..1640223 (+) 453 WP_100780685.1 macrodomain Ter protein MatP -
  ACB496_RS07555 (ACB496_07555) ompA 1640287..1641342 (-) 1056 WP_107703919.1 porin OmpA -
  ACB496_RS07560 (ACB496_07560) sulA 1641699..1642208 (-) 510 WP_181827581.1 SOS-induced cell division inhibitor SulA -
  ACB496_RS07565 (ACB496_07565) sxy/tfoX 1642427..1643053 (+) 627 WP_100780904.1 TfoX/Sxy family DNA transformation protein Regulator
  ACB496_RS07570 (ACB496_07570) yccS 1643010..1645172 (-) 2163 WP_100780682.1 YccS family putative transporter -
  ACB496_RS07575 (ACB496_07575) - 1645192..1645638 (-) 447 WP_100780681.1 YccF domain-containing protein -
  ACB496_RS07580 (ACB496_07580) helD 1645762..1647816 (+) 2055 WP_371974871.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23925.53 Da        Isoelectric Point: 9.0848

>NTDB_id=1038619 ACB496_RS07565 WP_100780904.1 1642427..1643053(+) (sxy/tfoX) [Lelliottia nimipressuralis strain SKB.4e]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVNEAVFAMVSDGELYLRACEQSAQYCVKQSSSFLTLLKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALEAARQERSLRHQRRRLKDLPNLTFQIEVLLCEAGVTSETMLRALGAEECWLKIRARN
KNLGIRVLFALAGAIEGTHEAALPTVRRRELTEWFNALPVLPDSHSDR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=1038619 ACB496_RS07565 WP_100780904.1 1642427..1643053(+) (sxy/tfoX) [Lelliottia nimipressuralis strain SKB.4e]
ATGAAAAAGATATCTTATGAACGGATCTATAAGTCCCAGGAATACCTCTCTCCGTTGGGTGAAATCCATCATCGTGCCCT
TTTCGGTGGGTATACCCTGGCGGTGAATGAAGCCGTGTTTGCGATGGTCTCTGATGGCGAGCTTTACCTGCGTGCCTGTG
AACAGAGCGCTCAGTACTGTGTAAAACAGTCCTCTTCATTTTTAACTCTGTTGAAACGGGGCAGGCCTGTGCTACTGAAC
TATTACCGGGTGGATGACGGGCTATGGCAGGACAGGGAAAGGCTATTGCAACTTTCCAGTTTTGCTCTTGAAGCCGCCCG
TCAGGAGCGCTCTCTACGGCATCAGAGGCGGCGACTCAAAGATTTACCCAACCTGACGTTTCAAATTGAAGTGCTTCTCT
GCGAAGCTGGCGTCACCAGTGAAACCATGCTGAGGGCGCTAGGGGCAGAGGAGTGCTGGCTGAAAATCAGGGCCAGAAAT
AAGAACCTGGGGATCAGAGTGTTGTTTGCGCTGGCAGGGGCAATAGAAGGAACGCATGAAGCTGCGCTCCCGACGGTCAG
ACGCCGGGAGCTAACGGAGTGGTTTAATGCGCTTCCTGTACTGCCGGATAGTCATTCCGATAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

57.576

95.192

0.548

Multiple sequence alignment