Detailed information NTG1038594

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACB494_RS03195
• Genome accession: NZ_CP167171
• Coordinates: 700424..701290 (-)
• Length: 288 a.a.
• NCBI ID: WP_372029305.1
• Uniprot ID: -
• Organism: Pseudomonas kurunegalensis strain AHC.cmcY
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 695424..706290

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACB494_RS03160 (ACB494_03160)	-	695954..697249 (-)	1296	WP_372029304.1	NAD(P)/FAD-dependent oxidoreductase	-
ACB494_RS03165 (ACB494_03165)	-	697334..697507 (-)	174	WP_013970765.1	DUF3094 family protein	-
ACB494_RS03170 (ACB494_03170)	-	697640..698269 (-)	630	WP_013970766.1	DUF1780 domain-containing protein	-
ACB494_RS03175 (ACB494_03175)	-	698325..698756 (-)	432	WP_110740611.1	hypothetical protein	-
ACB494_RS03180 (ACB494_03180)	-	698843..699550 (+)	708	WP_198748954.1	energy-coupling factor ABC transporter permease	-
ACB494_RS03185 (ACB494_03185)	yacG	699604..699804 (-)	201	WP_198748953.1	DNA gyrase inhibitor YacG	-
ACB494_RS03190 (ACB494_03190)	coaE	699801..700424 (-)	624	WP_198748952.1	dephospho-CoA kinase	-
ACB494_RS03195 (ACB494_03195)	pilD	700424..701290 (-)	867	WP_372029305.1	A24 family peptidase	Machinery gene
ACB494_RS03200 (ACB494_03200)	-	701293..702501 (-)	1209	WP_372029306.1	type II secretion system F family protein	-
ACB494_RS03205 (ACB494_03205)	-	702718..703128 (+)	411	WP_372029307.1	pilin	-
ACB494_RS03215 (ACB494_03215)	-	703441..704652 (+)	1212	WP_372029308.1	tyrosine-type recombinase/integrase	-
ACB494_RS03220 (ACB494_03220)	-	704649..705386 (+)	738	WP_372029309.1	hypothetical protein	-
ACB494_RS03225 (ACB494_03225)	-	705506..705709 (+)	204	WP_367863356.1	helix-turn-helix transcriptional regulator	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31948.19 Da
• Isoelectric Point: 7.5984

>NTDB_id=1038594 ACB494_RS03195 WP_372029305.1 700424..701290(-) (pilD) [Pseudomonas kurunegalensis strain AHC.cmcY]
MTLWTLLAEQPAYFLTLATLLGLLVGSFLNVLVYRLPIMLERQWQREAQEVLGLPVTPHERFDLCLPASRCPHCAHQIRA
WENIPVISYLALRGRCSSCKTRISPRYPVVEIASALLSLVVAWRFGASAETLLALPLTWCLLALSLIDAEHQLLPDVLVL
PMLWLGLIVNAFGLYVPLTDALWGAVVGYLSLWTVYWVFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LVGLCLLRLRRHAMGTAMPFGPYLAIAGWIAVLWGDEIVASYMQLLGY

Nucleotide

• Length: 867 bp

>NTDB_id=1038594 ACB494_RS03195 WP_372029305.1 700424..701290(-) (pilD) [Pseudomonas kurunegalensis strain AHC.cmcY]
ATGACTTTATGGACTTTGCTGGCAGAGCAGCCGGCGTACTTCCTCACCCTGGCCACGCTGCTCGGCCTGTTGGTGGGCAG
TTTTCTCAATGTGCTGGTGTATCGGCTGCCGATCATGCTGGAGCGGCAATGGCAGCGTGAGGCACAAGAAGTGTTGGGGT
TACCGGTTACGCCACACGAACGGTTCGACCTGTGCCTGCCCGCCTCCCGCTGCCCACATTGCGCGCATCAGATTCGCGCG
TGGGAGAACATTCCGGTCATCAGTTACCTGGCATTGCGCGGGCGCTGTTCATCCTGCAAAACCCGCATCAGCCCGCGCTA
CCCGGTGGTGGAAATCGCCAGCGCGCTGCTGTCGCTGGTGGTGGCGTGGCGTTTTGGCGCTTCTGCCGAAACCTTACTGG
CACTGCCGCTCACCTGGTGCCTGCTGGCGCTGAGCCTGATCGATGCCGAGCATCAGCTGTTGCCGGATGTGCTGGTGCTG
CCAATGCTGTGGCTGGGGCTGATCGTGAACGCCTTCGGCCTTTATGTACCGTTGACCGACGCGCTGTGGGGCGCGGTGGT
CGGGTACCTCAGCCTGTGGACCGTGTACTGGGTGTTCAAGCTGGTCACCGGCAAGGAAGGCATGGGCTACGGCGACTTCA
AGCTGATGGCGCTGATCGGGGCCTGGGGTGGCTGGCAGGTGTTGCCGTTGACGCTACTGCTGTCGTCGGTGGTGGGCGCG
CTGGTTGGCCTGTGCCTGCTGCGTTTGCGCCGGCATGCCATGGGCACGGCGATGCCGTTCGGGCCTTATCTGGCGATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATAGTCGCCTCTTACATGCAACTGCTTGGATACTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.261	95.833	0.51
pilD	Acinetobacter baumannii D1279779	50.89	97.569	0.497
pilD	Acinetobacter nosocomialis M2	50.178	97.569	0.49
pilD	Vibrio campbellii strain DS40M4	49.64	96.528	0.479
pilD	Neisseria gonorrhoeae MS11	49.627	93.056	0.462