Detailed information NTG1038475

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB7933_RS05770
• Genome accession: NZ_CP167125
• Coordinates: 1278376..1279242 (-)
• Length: 288 a.a.
• NCBI ID: WP_024073383.1
• Uniprot ID: -
• Organism: Pseudomonas sp. NT2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1273376..1284242

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB7933_RS05730 (AB7933_05730)	-	1273765..1275063 (-)	1299	WP_017845476.1	NAD(P)/FAD-dependent oxidoreductase	-
AB7933_RS05735 (AB7933_05735)	-	1275124..1275297 (-)	174	WP_024073379.1	DUF3094 family protein	-
AB7933_RS05740 (AB7933_05740)	-	1275387..1276016 (-)	630	WP_017845475.1	DUF1780 domain-containing protein	-
AB7933_RS05745 (AB7933_05745)	-	1276117..1276584 (+)	468	WP_024073380.1	hypothetical protein	-
AB7933_RS05750 (AB7933_05750)	-	1276581..1277270 (+)	690	WP_024073381.1	energy-coupling factor ABC transporter permease	-
AB7933_RS05755 (AB7933_05755)	-	1277347..1277562 (+)	216	WP_003171680.1	hypothetical protein	-
AB7933_RS05760 (AB7933_05760)	yacG	1277559..1277759 (-)	201	WP_017845472.1	DNA gyrase inhibitor YacG	-
AB7933_RS05765 (AB7933_05765)	coaE	1277756..1278379 (-)	624	WP_024073382.1	dephospho-CoA kinase	-
AB7933_RS05770 (AB7933_05770)	pilD	1278376..1279242 (-)	867	WP_024073383.1	A24 family peptidase	Machinery gene
AB7933_RS05775 (AB7933_05775)	pilC	1279239..1280447 (-)	1209	WP_024073384.1	type II secretion system F family protein	Machinery gene
AB7933_RS05780 (AB7933_05780)	-	1280649..1281062 (+)	414	WP_024073385.1	pilin	-
AB7933_RS05785 (AB7933_05785)	-	1281097..1282506 (+)	1410	WP_024073386.1	O-antigen ligase	-
AB7933_RS05795 (AB7933_05795)	-	1282769..1283074 (+)	306	WP_024073387.1	DUF6388 family protein	-
AB7933_RS05800 (AB7933_05800)	nadC	1283196..1284044 (-)	849	WP_024073388.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31888.22 Da
• Isoelectric Point: 7.0716

>NTDB_id=1038475 AB7933_RS05770 WP_024073383.1 1278376..1279242(-) (pilD) [Pseudomonas sp. NT2]
MNLLLTEQPWAFVAVALVLGLIIGSFLNVLVWRLPKMLEREWRAQALEVLGMPADPAGPTYNLMHPNSCCPHCNHPIRPW
ENIPLLSYLMLRGRCAHCQQPISARYPITELACGLISAMVAWHFGFGWQAGAVMLLSWGLLAMSLIDVDHQLLPDILVLP
LLWLGLIINSADLLTVLPDALWGAVIGYLSLWTVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMSSLVGVI
VGLILMRLRKAEISAPMPFGPYLAIAGWIAVLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=1038475 AB7933_RS05770 WP_024073383.1 1278376..1279242(-) (pilD) [Pseudomonas sp. NT2]
TTGAACCTGCTGCTGACTGAGCAGCCATGGGCGTTTGTCGCAGTGGCCCTGGTACTGGGGCTGATCATCGGTAGCTTCCT
CAATGTACTGGTATGGCGCCTGCCGAAAATGCTTGAGCGGGAATGGCGCGCACAAGCCCTTGAAGTGCTCGGCATGCCCG
CCGACCCCGCCGGGCCCACCTACAACCTGATGCACCCCAACTCCTGCTGCCCGCACTGCAATCACCCGATTCGCCCGTGG
GAGAATATCCCGCTGCTCAGCTACCTCATGCTCCGGGGGCGTTGCGCCCATTGTCAGCAGCCGATCAGTGCACGCTACCC
CATCACTGAACTGGCCTGCGGGCTGATCTCGGCCATGGTGGCCTGGCATTTTGGCTTTGGCTGGCAAGCCGGGGCAGTCA
TGTTGTTGAGCTGGGGGCTGCTGGCAATGAGCCTGATCGATGTGGATCACCAACTGCTACCCGATATCCTGGTCCTGCCG
CTGCTGTGGCTGGGGCTGATCATCAACAGCGCCGACCTGCTGACCGTACTGCCGGACGCACTGTGGGGCGCGGTGATCGG
CTACCTAAGTCTGTGGACAGTGTTCTGGCTGTTCAAACTGGTGACCGGCAAGGACGGCATGGGCCATGGTGACTTCAAGT
TATTGGCGCTGCTTGGCGCCTGGGGCGGCTGGCAGATTCTGCCGATGACGCTACTGATGTCTTCGCTGGTGGGCGTGATC
GTAGGGCTGATTCTGATGCGCTTGCGCAAGGCTGAGATCTCGGCACCGATGCCGTTTGGTCCCTATCTGGCAATTGCCGG
CTGGATTGCCGTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.676	96.528	0.528
pilD	Vibrio campbellii strain DS40M4	51.613	96.875	0.5
pilD	Acinetobacter baumannii D1279779	51.282	94.792	0.486
pilD	Acinetobacter nosocomialis M2	51.282	94.792	0.486
pilD	Neisseria gonorrhoeae MS11	49.259	93.75	0.462