Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACB089_RS24920 Genome accession   NZ_CP167122
Coordinates   5003159..5003728 (+) Length   189 a.a.
NCBI ID   WP_068985805.1    Uniprot ID   -
Organism   Lysinibacillus sp. RS10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4998159..5008728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB089_RS24890 (ACB089_24880) - 4998295..4999179 (+) 885 WP_374964392.1 mechanosensitive ion channel family protein -
  ACB089_RS24895 (ACB089_24885) - 4999181..4999381 (+) 201 WP_368637332.1 DUF951 domain-containing protein -
  ACB089_RS24900 (ACB089_24890) ychF 4999777..5000877 (+) 1101 WP_068985809.1 redox-regulated ATPase YchF -
  ACB089_RS24905 (ACB089_24895) - 5000966..5002006 (+) 1041 WP_374964393.1 acyl-CoA dehydrogenase -
  ACB089_RS24910 (ACB089_24900) - 5002093..5002653 (-) 561 WP_374964394.1 DUF3267 domain-containing protein -
  ACB089_RS24915 (ACB089_24905) rpsF 5002827..5003114 (+) 288 WP_068985806.1 30S ribosomal protein S6 -
  ACB089_RS24920 (ACB089_24910) ssbA 5003159..5003728 (+) 570 WP_068985805.1 single-stranded DNA-binding protein Machinery gene
  ACB089_RS24925 (ACB089_24915) rpsR 5003767..5004003 (+) 237 WP_049662616.1 30S ribosomal protein S18 -
  ACB089_RS24930 (ACB089_24920) - 5004847..5005788 (+) 942 WP_374964396.1 YybS family protein -
  ACB089_RS24935 (ACB089_24925) - 5005801..5007774 (+) 1974 WP_374964398.1 DHH family phosphoesterase -
  ACB089_RS24940 (ACB089_24930) rplI 5007771..5008217 (+) 447 WP_374964400.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20548.53 Da        Isoelectric Point: 4.7621

>NTDB_id=1038355 ACB089_RS24920 WP_068985805.1 5003159..5003728(+) (ssbA) [Lysinibacillus sp. RS10]
MINRVVLVGRLTKDPELRYTPNGVASTRFTVAVNRTFSNQQGDREADFISCVAWRKQAENLANFMRKGSLIGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRNGGGAPASPQYGGQTYGNNQPSYGGGQPQQQFGGAMPGQGSFGGDAYQQNQPPM
NQPNYTRVDEDPFANSKGPIEVSEDDLPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1038355 ACB089_RS24920 WP_068985805.1 5003159..5003728(+) (ssbA) [Lysinibacillus sp. RS10]
ATGATAAACCGTGTCGTATTAGTTGGAAGACTAACAAAAGATCCTGAGCTGCGCTATACGCCTAATGGTGTTGCGTCTAC
AAGATTTACAGTTGCTGTGAATCGAACATTCTCAAACCAACAAGGTGATCGCGAAGCTGATTTCATTAGCTGTGTTGCTT
GGCGCAAACAGGCTGAAAACCTTGCGAACTTCATGCGAAAAGGAAGTTTAATTGGAGTGGAAGGCCGCATTCAAACAGGC
AGTTATGAAGGACAAGATGGTAAGCGAGTATACACAACAGATGTAGTGGCAGATAGCGTACAGTTTTTAGAACCTCGTAA
TGGTGGTGGTGCTCCTGCATCTCCTCAATACGGTGGACAGACTTACGGTAATAATCAACCGTCATATGGCGGTGGTCAAC
CACAACAACAGTTTGGTGGTGCTATGCCAGGGCAGGGTTCATTTGGCGGCGATGCTTATCAGCAAAATCAACCACCTATG
AATCAGCCGAATTATACACGTGTAGATGAGGATCCATTTGCTAATAGCAAAGGACCGATAGAAGTATCTGAGGATGATTT
ACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.026

100

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

48.205

100

0.497

Multiple sequence alignment