Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ACB089_RS13965 Genome accession   NZ_CP167122
Coordinates   2728256..2730019 (-) Length   587 a.a.
NCBI ID   WP_374966945.1    Uniprot ID   -
Organism   Lysinibacillus sp. RS10     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2723256..2735019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB089_RS13955 (ACB089_13945) - 2723805..2725988 (-) 2184 WP_374966943.1 helix-turn-helix domain-containing protein -
  ACB089_RS13960 (ACB089_13950) rcrQ 2726437..2728263 (-) 1827 WP_374966944.1 ABC transporter ATP-binding protein Regulator
  ACB089_RS13965 (ACB089_13955) rcrP 2728256..2730019 (-) 1764 WP_374966945.1 ABC transporter ATP-binding protein Regulator
  ACB089_RS13970 (ACB089_13960) - 2730090..2730533 (-) 444 WP_374966946.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACB089_RS13975 (ACB089_13965) - 2731332..2731478 (-) 147 WP_374966947.1 hypothetical protein -
  ACB089_RS13980 (ACB089_13970) - 2731497..2732069 (-) 573 WP_374966948.1 hypothetical protein -
  ACB089_RS13985 (ACB089_13975) - 2732297..2732872 (-) 576 WP_374966949.1 phosphoglycerate mutase family protein -
  ACB089_RS13990 (ACB089_13980) - 2733172..2733393 (+) 222 WP_374966950.1 hypothetical protein -
  ACB089_RS13995 (ACB089_13985) - 2733470..2734318 (+) 849 WP_374966951.1 hypothetical protein -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64571.10 Da        Isoelectric Point: 8.3068

>NTDB_id=1038337 ACB089_RS13965 WP_374966945.1 2728256..2730019(-) (rcrP) [Lysinibacillus sp. RS10]
MLKIFKYLKPKEWTLIVASIVFIVGQVWLDLKLPDYMSKITTLVQTEGSKTSEIWSAGGKMLLCALGSMILAVVVGYFAA
KVATSLSKELRKGVFDKTLSFSMEEINGFSIASLITRSTNDITQIQQTVAMGLQVMIKAPILATWAILKIMGKSWEWSAA
TGVAVIVLLILIGNLIIFVLPKFKVVQKLTDNLNRVTREGLTGIRVVHAYNAQGYQEEKFEQVNKNLTDTNLFVNRLMAL
MQPGMGLIMSGLTLAIYWIGAHLINNAAGMDRIGKFSDMVVFSSYAMQVVMAFMLLSMTFILLPRAAVSAARINEVLNTP
QTIIDGDIKSSPKGIEGEIELRKVSFKYPDAEDYVLKDISFTAHKGETVAFIGSTGSGKSTLINLIPRFYDATEGEVLVD
GINVKEYAHEALYNKLGYVSQKAVLFSGTVKSNVAYGENGQIPSTDEGIKKAVEIAQGKEFVETMEGEYEAAIAQGGTNL
SGGQKQRISIARAVNRNPEIFIFDDSFSALDYKTDRQLRSTLKKETKGATSLIVAQRIGTIKDADKIIVLDEGKIVGMGK
HSELLKTCNTYQEIAYSQLSKEELEND

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=1038337 ACB089_RS13965 WP_374966945.1 2728256..2730019(-) (rcrP) [Lysinibacillus sp. RS10]
ATGTTGAAAATATTTAAATACTTAAAACCAAAAGAATGGACGCTAATCGTTGCCAGCATTGTGTTCATTGTAGGGCAAGT
TTGGCTGGATTTGAAGTTGCCAGATTATATGTCTAAAATTACGACACTTGTCCAAACAGAGGGCAGTAAAACGAGCGAGA
TATGGTCAGCTGGAGGAAAGATGCTTTTATGTGCCCTTGGCAGTATGATATTGGCAGTCGTTGTTGGTTATTTTGCGGCA
AAGGTAGCAACGTCTCTTTCAAAGGAATTGCGAAAAGGAGTATTTGACAAAACTTTATCTTTCTCTATGGAGGAGATTAA
TGGTTTTTCAATCGCAAGTCTTATTACTCGTTCTACAAATGATATTACGCAAATACAGCAAACCGTTGCAATGGGTCTTC
AAGTTATGATCAAGGCTCCTATCCTTGCAACGTGGGCTATTTTGAAGATTATGGGGAAAAGTTGGGAGTGGTCAGCGGCA
ACAGGAGTAGCTGTCATTGTTTTACTTATTTTGATAGGTAACCTGATTATCTTTGTGCTACCGAAATTTAAAGTCGTTCA
AAAACTGACAGATAATCTTAATCGAGTAACAAGAGAAGGTTTAACTGGTATTCGTGTTGTTCATGCTTATAACGCACAAG
GGTATCAGGAAGAAAAATTTGAACAAGTAAATAAAAACTTAACGGATACAAATCTTTTTGTGAATCGCCTTATGGCCCTT
ATGCAGCCAGGGATGGGTCTGATTATGTCAGGTTTAACTCTTGCAATCTATTGGATTGGAGCGCATTTAATTAATAATGC
AGCGGGTATGGATAGAATCGGTAAGTTTAGTGATATGGTCGTATTTTCATCTTATGCAATGCAGGTAGTTATGGCATTTA
TGCTATTATCAATGACGTTCATTTTGCTACCGAGAGCAGCAGTATCTGCAGCACGTATTAATGAAGTACTAAATACACCT
CAGACAATTATTGATGGAGACATAAAATCGTCGCCTAAAGGAATCGAAGGTGAAATCGAACTGCGTAAAGTTAGTTTTAA
ATATCCTGATGCAGAAGACTATGTTTTAAAGGATATTAGCTTTACAGCACATAAAGGCGAAACTGTTGCTTTTATCGGTT
CTACGGGTAGTGGTAAGAGTACGTTAATTAATTTAATCCCAAGATTTTACGATGCTACGGAGGGAGAGGTATTAGTCGAC
GGAATCAATGTGAAAGAATACGCACATGAAGCTCTTTATAATAAGCTTGGCTACGTTTCACAAAAAGCCGTATTATTTTC
AGGTACGGTAAAATCTAATGTTGCCTACGGTGAAAACGGCCAGATCCCTTCAACAGATGAAGGAATCAAAAAAGCAGTGG
AAATTGCCCAAGGTAAGGAATTTGTGGAGACAATGGAAGGCGAATATGAAGCGGCGATCGCCCAAGGTGGTACAAATCTT
TCGGGAGGACAGAAACAGCGTATTTCTATTGCAAGGGCAGTTAATAGAAATCCAGAAATCTTTATTTTTGATGATTCGTT
CTCTGCATTAGATTATAAAACGGACCGTCAACTTCGTTCTACATTGAAAAAAGAGACAAAAGGTGCAACCTCTTTAATTG
TGGCACAGCGAATTGGAACAATTAAAGATGCTGATAAAATTATTGTTCTTGATGAAGGTAAAATTGTTGGTATGGGAAAA
CATAGTGAATTATTGAAAACTTGTAACACTTATCAGGAAATCGCCTATTCTCAGCTATCGAAGGAGGAGTTGGAAAATGA
CTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(18-293)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

56.02

100

0.571

Multiple sequence alignment