Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACB089_RS13960 Genome accession   NZ_CP167122
Coordinates   2726437..2728263 (-) Length   608 a.a.
NCBI ID   WP_374966944.1    Uniprot ID   -
Organism   Lysinibacillus sp. RS10     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2721437..2733263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB089_RS13945 (ACB089_13935) - 2721629..2722501 (-) 873 WP_374966941.1 branched-chain amino acid ABC transporter permease -
  ACB089_RS13950 (ACB089_13940) - 2722787..2723197 (-) 411 WP_374966942.1 acyl-CoA thioesterase -
  ACB089_RS13955 (ACB089_13945) - 2723805..2725988 (-) 2184 WP_374966943.1 helix-turn-helix domain-containing protein -
  ACB089_RS13960 (ACB089_13950) rcrQ 2726437..2728263 (-) 1827 WP_374966944.1 ABC transporter ATP-binding protein Regulator
  ACB089_RS13965 (ACB089_13955) rcrP 2728256..2730019 (-) 1764 WP_374966945.1 ABC transporter ATP-binding protein Regulator
  ACB089_RS13970 (ACB089_13960) - 2730090..2730533 (-) 444 WP_374966946.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACB089_RS13975 (ACB089_13965) - 2731332..2731478 (-) 147 WP_374966947.1 hypothetical protein -
  ACB089_RS13980 (ACB089_13970) - 2731497..2732069 (-) 573 WP_374966948.1 hypothetical protein -
  ACB089_RS13985 (ACB089_13975) - 2732297..2732872 (-) 576 WP_374966949.1 phosphoglycerate mutase family protein -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 67444.58 Da        Isoelectric Point: 7.1505

>NTDB_id=1038336 ACB089_RS13960 WP_374966944.1 2726437..2728263(-) (rcrQ) [Lysinibacillus sp. RS10]
MTNTQNKPRKGPGGPGHMMAPGEKPKNFKKPWGKLIAYCKPYLPAIIFALVLAVVGTIFTIIGPNKLSEITDLIMEGMAG
EIDLTAIGKIGLFLAILYGLSFIFNYIQAFMMATITQRVSKRLRTDISNKIDRLPLKYFDSTTNGDVLSRVTNDVDMIGQ
SLNQSIGSLVSAAVMFFGSLIMMFYINVTMALSAIAATFIGFVFMTFIISKSRKYFVRQQQDLGRINGHIEEIYSGHSVM
KVYNGENVAKQEFNEINESLFNSAWRAQFMSGMMMPLMIFIGNLGYVVVCVVGAALTMKGSITFGVIVSFMVYIRLFTQP
LSQLAQAATSLQSTAAASERVFEFLQEEELKDESDKEATLDAKDVKGNVKFENVKFGYTKEKLIIKDFSAQIKAGQKVAI
VGPTGAGKTTLVNLLMRFYEIDSGEIMIEDVPTKSITRKNVHDLFCMVLQDTWLFEGTIKENIIYNKEHVTDEEVVAACR
AVGLDHFIKTLPKGYDTVLNDNTSLSVGQKQLITIARAMVKKAPLLILDEATSSVDTRTEALIQKAMDKLMVGRTSFVIA
HRLSTIKNADLILVMKDGDIIESGNHEELIAEKGFYADLYNSQFEDAS

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=1038336 ACB089_RS13960 WP_374966944.1 2726437..2728263(-) (rcrQ) [Lysinibacillus sp. RS10]
ATGACTAATACACAAAATAAGCCCCGAAAAGGTCCAGGTGGTCCAGGTCATATGATGGCTCCTGGAGAAAAGCCCAAGAA
TTTTAAAAAGCCTTGGGGGAAGTTGATTGCCTATTGTAAACCTTATTTGCCTGCGATTATCTTTGCGCTTGTATTAGCAG
TTGTAGGAACAATTTTTACGATCATTGGACCCAATAAACTTAGTGAGATCACCGATTTGATAATGGAAGGCATGGCTGGT
GAGATTGATCTTACGGCTATCGGAAAAATTGGTCTGTTCCTTGCTATTTTGTATGGGTTGAGTTTTATCTTCAATTATAT
TCAAGCGTTTATGATGGCTACTATTACGCAGAGAGTTTCCAAAAGATTACGGACAGATATCTCGAACAAAATCGATAGAT
TACCGTTGAAATACTTTGATTCTACAACCAACGGCGATGTGTTAAGCCGTGTCACGAATGATGTGGATATGATTGGACAG
TCTCTAAACCAAAGTATCGGTTCGTTAGTATCAGCGGCAGTAATGTTCTTTGGATCTTTGATAATGATGTTCTATATTAA
TGTTACGATGGCTCTTTCTGCCATTGCTGCAACTTTCATTGGATTTGTATTCATGACTTTTATTATATCCAAATCTCGCA
AGTACTTCGTTCGTCAGCAGCAAGACCTTGGTAGAATAAATGGTCATATTGAAGAAATCTATTCAGGGCATAGTGTTATG
AAGGTTTATAACGGTGAAAATGTAGCGAAGCAAGAATTTAATGAAATCAATGAAAGTCTATTTAATAGCGCTTGGCGAGC
ACAGTTTATGTCGGGCATGATGATGCCTCTCATGATCTTTATTGGAAATTTAGGTTATGTTGTTGTTTGTGTAGTAGGTG
CTGCACTAACAATGAAAGGATCCATTACATTTGGTGTTATTGTTTCATTTATGGTCTATATCCGCTTATTTACGCAGCCG
TTGTCTCAATTAGCACAGGCAGCTACAAGCTTGCAGTCAACTGCCGCAGCGAGCGAACGTGTATTTGAGTTCTTACAAGA
AGAGGAGCTTAAAGATGAAAGTGATAAGGAAGCCACTTTAGATGCTAAAGATGTTAAAGGTAATGTAAAATTTGAAAATG
TTAAGTTCGGATATACGAAAGAGAAACTTATTATTAAAGATTTCTCTGCTCAAATAAAAGCCGGACAAAAAGTGGCAATC
GTCGGACCTACAGGGGCTGGGAAAACAACACTTGTTAATCTACTCATGCGTTTCTATGAAATAGACAGCGGGGAAATCAT
GATTGAGGATGTACCGACTAAGTCCATTACTCGTAAAAATGTTCATGACTTATTTTGCATGGTGCTGCAAGATACTTGGT
TATTCGAAGGTACCATTAAGGAAAATATCATTTATAACAAAGAGCATGTAACCGATGAAGAAGTAGTTGCAGCTTGTCGG
GCAGTAGGTTTGGACCACTTTATTAAAACGTTGCCGAAAGGTTATGATACAGTTTTAAATGATAATACAAGTTTATCTGT
CGGACAGAAACAGCTTATTACGATTGCTAGGGCAATGGTTAAAAAAGCACCGTTGCTTATTTTAGATGAAGCTACTAGTT
CCGTTGATACGCGTACTGAGGCACTTATTCAAAAAGCAATGGATAAGTTGATGGTGGGCCGAACATCATTTGTCATTGCG
CATAGACTTTCAACAATTAAAAACGCCGATTTAATTTTAGTTATGAAAGACGGAGATATTATTGAAAGCGGTAATCATGA
AGAGCTGATTGCCGAAAAAGGATTCTATGCGGATCTATATAATAGTCAGTTTGAAGATGCTTCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(386-533)

ABC transporter transmembrane region (ABC_membrane)

(46-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

58.824

95.066

0.559

Multiple sequence alignment