Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   ACB088_RS18670 Genome accession   NZ_CP167121
Coordinates   3926935..3927819 (+) Length   294 a.a.
NCBI ID   WP_375037668.1    Uniprot ID   -
Organism   Acinetobacter sp. RW6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3921935..3932819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB088_RS18645 (ACB088_18645) - 3922244..3923491 (-) 1248 WP_199989505.1 YihY family inner membrane protein -
  ACB088_RS18650 (ACB088_18650) wrbA 3923852..3924460 (+) 609 WP_199989507.1 NAD(P)H:quinone oxidoreductase -
  ACB088_RS18655 (ACB088_18655) - 3924512..3925087 (-) 576 WP_004639480.1 xanthine phosphoribosyltransferase -
  ACB088_RS18660 (ACB088_18660) - 3925159..3925872 (-) 714 WP_092711042.1 DUF3108 domain-containing protein -
  ACB088_RS18665 (ACB088_18665) - 3926031..3926702 (-) 672 WP_375037667.1 hypothetical protein -
  ACB088_RS18670 (ACB088_18670) tonB2 3926935..3927819 (+) 885 WP_375037668.1 energy transducer TonB Machinery gene
  ACB088_RS18675 (ACB088_18675) ybeY 3927921..3928403 (-) 483 WP_133747486.1 rRNA maturation RNase YbeY -
  ACB088_RS18680 (ACB088_18680) - 3928413..3929501 (-) 1089 WP_003653596.1 PhoH family protein -
  ACB088_RS18685 (ACB088_18685) miaB 3929539..3930990 (-) 1452 WP_045433034.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33563.10 Da        Isoelectric Point: 9.1533

>NTDB_id=1038320 ACB088_RS18670 WP_375037668.1 3926935..3927819(+) (tonB2) [Acinetobacter sp. RW6]
MLNKRSLSIEPFYHWWQDRVFIAATILAVLLHIFVLLIHFAMPSPSEQSTKEIAISIRSSNEPVQQADFLAQADQQGSGA
FRDAHRTSSDTPNPMPNDASTGDAQLESLQKVQQQRELKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAVMVAS
LEAQYLQRRQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKLQQLKGEVRLMVILNAQGGIRAIRL
LESSGHSVLDEAAKSSVRRGAPFGHFDTNMKDISELRIVRTWRFDPAQAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=1038320 ACB088_RS18670 WP_375037668.1 3926935..3927819(+) (tonB2) [Acinetobacter sp. RW6]
ATGTTGAACAAAAGAAGTCTATCGATAGAGCCTTTTTATCATTGGTGGCAAGACCGAGTTTTTATTGCTGCGACAATATT
GGCAGTCTTACTGCATATTTTTGTGTTGCTCATTCACTTTGCGATGCCTAGCCCATCAGAACAATCTACTAAAGAAATTG
CAATTTCAATTCGATCAAGCAATGAGCCAGTTCAGCAGGCAGACTTTTTGGCGCAAGCAGACCAGCAAGGTTCAGGCGCA
TTTCGTGATGCCCACCGTACCTCTAGTGATACACCAAATCCTATGCCTAATGATGCTTCAACTGGAGATGCGCAGTTAGA
AAGTTTGCAAAAGGTTCAGCAACAAAGAGAGCTTAAATTTGAAGAAAAAGTCTTAATGACTGTTTTGAGTTGGCAAAAAC
AAGCTGACGCCAGTCAAAGGAAAAAAGAATTAGAACAATTACAAAGTCAATTTCAGGCAAAAGCTGTGATGGTTGCGAGC
CTTGAAGCACAATATTTACAACGCAGACAAGATTTCAGCCGCCAGCAAAAAATAAAAACAGTAGATGGAATTCAGGCGAA
AAAAGATGCCTCGGCTGCTTATTTAGATAAGTTCCGTGAAAAAGTGGAGTTGTATGGTAATCGCTATTACCCAGAAGAAG
CCAAACTGCAACAGTTAAAAGGCGAAGTCCGTTTAATGGTTATTTTAAATGCACAAGGAGGGATTCGTGCAATCCGGTTA
CTTGAGAGCTCAGGGCATTCGGTATTGGATGAAGCTGCAAAGTCTTCAGTACGTCGCGGCGCACCATTTGGGCATTTTGA
TACCAATATGAAAGATATTTCTGAATTGCGTATTGTACGTACTTGGCGTTTCGATCCTGCTCAAGCTGAATTTGAAGTGC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

88.435

100

0.884

Multiple sequence alignment