Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AB9L15_RS20920 Genome accession   NZ_CP167119
Coordinates   4210511..4211080 (+) Length   189 a.a.
NCBI ID   WP_008177953.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain LS1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4205511..4216080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9L15_RS20890 (AB9L15_20895) - 4205976..4206848 (+) 873 WP_375105789.1 mechanosensitive ion channel family protein -
  AB9L15_RS20895 (AB9L15_20900) - 4206850..4207050 (+) 201 WP_008177961.1 DUF951 domain-containing protein -
  AB9L15_RS20900 (AB9L15_20905) ychF 4207148..4208248 (+) 1101 WP_008177960.1 redox-regulated ATPase YchF -
  AB9L15_RS20905 (AB9L15_20910) - 4208331..4209371 (+) 1041 WP_043990422.1 acyl-CoA dehydrogenase -
  AB9L15_RS20910 (AB9L15_20915) - 4209413..4209997 (-) 585 WP_008177957.1 DUF3267 domain-containing protein -
  AB9L15_RS20915 (AB9L15_20920) rpsF 4210176..4210463 (+) 288 WP_008177955.1 30S ribosomal protein S6 -
  AB9L15_RS20920 (AB9L15_20925) ssbA 4210511..4211080 (+) 570 WP_008177953.1 single-stranded DNA-binding protein Machinery gene
  AB9L15_RS20925 (AB9L15_20930) rpsR 4211119..4211355 (+) 237 WP_004233359.1 30S ribosomal protein S18 -
  AB9L15_RS20930 (AB9L15_20935) - 4211578..4212519 (+) 942 WP_008177947.1 YybS family protein -
  AB9L15_RS20935 (AB9L15_20940) - 4212533..4214503 (+) 1971 WP_008177945.1 DHH family phosphoesterase -
  AB9L15_RS20940 (AB9L15_20945) rplI 4214503..4214949 (+) 447 WP_375105790.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20589.58 Da        Isoelectric Point: 4.7719

>NTDB_id=1038251 AB9L15_RS20920 WP_008177953.1 4210511..4211080(+) (ssbA) [Lysinibacillus fusiformis strain LS1]
MINRVVLVGRLTKDPELRYTPNGIASTRFTVAVNRAFSNQQGEREADFINCVAWRKQAENLANFMRKGSLIGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRNGSGAPAPQYGGGQTYGNNQPSYGGGQPQQQFGGAMPGQGSYGGDAYQQNQPPM
NQPNYTRVDEDPFANSKGPIEVSEDDLPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1038251 AB9L15_RS20920 WP_008177953.1 4210511..4211080(+) (ssbA) [Lysinibacillus fusiformis strain LS1]
ATGATAAACCGTGTCGTATTAGTTGGAAGACTAACAAAAGATCCTGAGCTACGTTATACACCAAATGGAATTGCGTCTAC
AAGATTTACAGTTGCTGTGAATCGTGCATTCTCAAATCAACAAGGTGAACGTGAAGCTGATTTCATTAACTGTGTTGCAT
GGCGAAAACAGGCTGAAAACCTAGCGAACTTCATGCGAAAAGGAAGTTTAATTGGGGTAGAAGGTCGTATCCAAACAGGC
AGTTATGAAGGACAAGACGGTAAGCGAGTATATACAACAGACGTTGTGGCGGATAGCGTACAGTTTTTAGAACCACGTAA
TGGTAGCGGTGCTCCTGCTCCTCAATACGGTGGTGGACAAACTTACGGTAATAACCAACCGTCATATGGCGGCGGTCAAC
CACAACAGCAGTTTGGTGGCGCTATGCCAGGACAGGGTTCCTATGGCGGCGATGCTTATCAGCAAAATCAACCACCTATG
AATCAGCCAAACTATACACGTGTAGATGAGGATCCATTTGCTAATAGCAAAGGACCGATAGAAGTATCTGAGGATGATCT
TCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.497

100

0.545
  ssb Latilactobacillus sakei subsp. sakei 23K

48.677

100

0.487

Multiple sequence alignment