Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | AB9L15_RS06115 | Genome accession | NZ_CP167119 |
| Coordinates | 1175658..1175990 (+) | Length | 110 a.a. |
| NCBI ID | WP_008181040.1 | Uniprot ID | - |
| Organism | Lysinibacillus fusiformis strain LS1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1170658..1180990
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB9L15_RS06085 (AB9L15_06085) | - | 1171143..1171322 (-) | 180 | WP_008181026.1 | DUF2759 domain-containing protein | - |
| AB9L15_RS06090 (AB9L15_06090) | - | 1171492..1172136 (+) | 645 | WP_089986114.1 | MBL fold metallo-hydrolase | - |
| AB9L15_RS06095 (AB9L15_06095) | - | 1172184..1172426 (-) | 243 | WP_004231035.1 | DUF2626 family protein | - |
| AB9L15_RS06100 (AB9L15_06100) | - | 1172544..1173254 (-) | 711 | WP_008181032.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| AB9L15_RS06105 (AB9L15_06105) | comGA | 1173580..1174599 (+) | 1020 | WP_008181034.1 | competence type IV pilus ATPase ComGA | - |
| AB9L15_RS06110 (AB9L15_06110) | comGB | 1174574..1175656 (+) | 1083 | WP_375106204.1 | competence type IV pilus assembly protein ComGB | - |
| AB9L15_RS06115 (AB9L15_06115) | comGC | 1175658..1175990 (+) | 333 | WP_008181040.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| AB9L15_RS06120 (AB9L15_06120) | comGD | 1175990..1176430 (+) | 441 | WP_008181042.1 | competence type IV pilus minor pilin ComGD | - |
| AB9L15_RS06125 (AB9L15_06125) | - | 1176423..1176740 (+) | 318 | WP_089986112.1 | hypothetical protein | - |
| AB9L15_RS06130 (AB9L15_06130) | comGF | 1176733..1177161 (+) | 429 | WP_008181045.1 | competence type IV pilus minor pilin ComGF | - |
| AB9L15_RS06135 (AB9L15_06135) | - | 1177360..1177875 (+) | 516 | WP_025116055.1 | shikimate kinase | - |
| AB9L15_RS06140 (AB9L15_06140) | gcvT | 1178379..1179482 (+) | 1104 | WP_008181052.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| AB9L15_RS06145 (AB9L15_06145) | gcvPA | 1179508..1180854 (+) | 1347 | WP_008181054.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 110 a.a. Molecular weight: 12241.32 Da Isoelectric Point: 5.1145
>NTDB_id=1038228 AB9L15_RS06115 WP_008181040.1 1175658..1175990(+) (comGC) [Lysinibacillus fusiformis strain LS1]
MKHIKQQNGFTLIEMLIVLLIISILILITIPNVTKHFATIDEKGCAAYINMVQGQVEAYRVDFMAYPTLEDLVKEGYLKE
NETTCPNKEEIVITTKGEVRLANVGAGTNG
MKHIKQQNGFTLIEMLIVLLIISILILITIPNVTKHFATIDEKGCAAYINMVQGQVEAYRVDFMAYPTLEDLVKEGYLKE
NETTCPNKEEIVITTKGEVRLANVGAGTNG
Nucleotide
Download Length: 333 bp
>NTDB_id=1038228 AB9L15_RS06115 WP_008181040.1 1175658..1175990(+) (comGC) [Lysinibacillus fusiformis strain LS1]
ATGAAACATATTAAACAACAAAATGGTTTTACTTTAATCGAAATGCTCATTGTTTTGTTAATCATTTCTATTCTTATTTT
AATTACAATTCCAAATGTTACGAAGCACTTCGCTACGATTGATGAGAAGGGCTGTGCTGCCTATATTAATATGGTACAGG
GGCAAGTAGAAGCCTATAGAGTGGATTTTATGGCATATCCAACTTTAGAGGATTTAGTAAAAGAAGGCTATTTGAAAGAA
AATGAAACAACTTGTCCTAATAAAGAAGAAATAGTTATTACGACTAAGGGAGAGGTACGGTTAGCAAATGTCGGTGCAGG
TACGAATGGCTAA
ATGAAACATATTAAACAACAAAATGGTTTTACTTTAATCGAAATGCTCATTGTTTTGTTAATCATTTCTATTCTTATTTT
AATTACAATTCCAAATGTTACGAAGCACTTCGCTACGATTGATGAGAAGGGCTGTGCTGCCTATATTAATATGGTACAGG
GGCAAGTAGAAGCCTATAGAGTGGATTTTATGGCATATCCAACTTTAGAGGATTTAGTAAAAGAAGGCTATTTGAAAGAA
AATGAAACAACTTGTCCTAATAAAGAAGAAATAGTTATTACGACTAAGGGAGAGGTACGGTTAGCAAATGTCGGTGCAGG
TACGAATGGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
55.208 |
87.273 |
0.482 |
| comGC | Staphylococcus aureus MW2 |
45.263 |
86.364 |
0.391 |
| comGC | Staphylococcus aureus N315 |
45.263 |
86.364 |
0.391 |