Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   QNH71_RS03460 Genome accession   NZ_OX352941
Coordinates   702316..702981 (-) Length   221 a.a.
NCBI ID   WP_024405695.1    Uniprot ID   -
Organism   Streptococcus suis isolate 861160_WT     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 697316..707981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH71_RS03435 - 697962..698255 (+) 294 WP_226319149.1 hypothetical protein -
  QNH71_RS03440 - 698252..698488 (+) 237 WP_226319150.1 hypothetical protein -
  QNH71_RS03445 xerS 698655..699725 (+) 1071 WP_024405698.1 tyrosine recombinase XerS Machinery gene
  QNH71_RS03450 - 699795..701303 (-) 1509 WP_024405697.1 phosphoglucomutase -
  QNH71_RS03455 - 701378..702319 (-) 942 WP_024405696.1 sensor histidine kinase -
  QNH71_RS03460 braR 702316..702981 (-) 666 WP_024405695.1 response regulator transcription factor Regulator
  QNH71_RS03465 - 703023..703289 (-) 267 WP_024405694.1 type II toxin-antitoxin system RelE/ParE family toxin -
  QNH71_RS03470 - 703273..703524 (-) 252 WP_012775104.1 DUF6290 family protein -
  QNH71_RS03475 - 703616..705586 (-) 1971 WP_024405693.1 FtsX-like permease family protein -
  QNH71_RS03480 - 705587..706339 (-) 753 WP_011922409.1 ABC transporter ATP-binding protein -
  QNH71_RS03485 - 706360..706737 (-) 378 WP_011922413.1 NisI/SpaI family lantibiotic immunity lipoprotein -
  QNH71_RS03490 - 706750..706890 (-) 141 WP_012775106.1 hypothetical protein -
  QNH71_RS03495 tnpA 707132..707605 (-) 474 WP_024378560.1 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25433.19 Da        Isoelectric Point: 4.7792

>NTDB_id=1038017 QNH71_RS03460 WP_024405695.1 702316..702981(-) (braR) [Streptococcus suis isolate 861160_WT]
MKKEKIYIVEDDEMIVQLLKQHLGKSYQVESVQNFRAVSQEVAEIKPDLVLMDINLPYYNGFYWTTEIRKTMTMPIIFIS
SSDDEMNAVMAMNMGGDDFVSKPFSLGILDAKIGAFLRRVNQFSKSTDLSIDQFQLSLDGRFSSESEQVQLSPTETKILS
ALLERQGQIVSKEELLEKLWENEEFIDQNTLNVNMTRLRKKVSEVGFERIHTVRGVGYLVK

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1038017 QNH71_RS03460 WP_024405695.1 702316..702981(-) (braR) [Streptococcus suis isolate 861160_WT]
ATGAAAAAAGAAAAGATTTATATTGTTGAAGATGATGAGATGATTGTCCAGCTCTTGAAGCAGCATTTGGGAAAATCTTA
TCAGGTAGAAAGTGTGCAGAATTTCCGAGCTGTCAGTCAGGAAGTTGCGGAAATCAAACCAGACTTAGTGCTGATGGACA
TTAACTTGCCCTATTACAACGGTTTTTATTGGACAACGGAAATCCGTAAAACCATGACCATGCCAATTATCTTTATCTCC
TCTAGCGATGATGAGATGAATGCGGTCATGGCCATGAACATGGGTGGCGATGATTTTGTTTCTAAGCCATTTTCTCTAGG
AATTTTGGATGCCAAAATCGGTGCCTTCCTGCGTAGGGTTAATCAATTCAGCAAATCAACCGATTTGTCTATCGACCAAT
TCCAGCTTAGTTTGGACGGACGATTTTCAAGCGAATCGGAACAGGTTCAGCTTTCACCTACTGAAACCAAGATTTTGTCC
GCCTTACTAGAAAGACAAGGGCAGATTGTCAGCAAGGAAGAACTCTTGGAAAAACTCTGGGAAAATGAAGAATTTATTGA
CCAGAACACGCTCAATGTCAACATGACCAGACTGCGTAAGAAGGTGAGCGAAGTCGGGTTTGAACGAATTCATACGGTTC
GTGGCGTGGGGTACTTGGTCAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-219)

Response regulator receiver domain (Response_reg)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.727

99.548

0.475

Multiple sequence alignment