Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   AD178_RS07990 Genome accession   NZ_OX244288
Coordinates   1570552..1571148 (-) Length   198 a.a.
NCBI ID   WP_000966755.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PT8105 isolate 2RLC4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1565552..1576148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AD178_RS07970 (SAMEA1463109_01610) - 1566482..1567186 (-) 705 WP_001055249.1 TIGR02206 family membrane protein -
  AD178_RS07975 (SAMEA1463109_01611) - 1567277..1567888 (-) 612 WP_000804592.1 NUDIX hydrolase -
  AD178_RS07980 (SAMEA1463109_01612) murF 1567875..1569248 (-) 1374 WP_000778725.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  AD178_RS07985 (SAMEA1463109_01613) - 1569333..1570376 (-) 1044 WP_000814639.1 D-alanine--D-alanine ligase -
  AD178_RS07990 (SAMEA1463109_01614) recR 1570552..1571148 (-) 597 WP_000966755.1 recombination mediator RecR Machinery gene
  AD178_RS07995 (SAMEA1463109_01615) pbp2b 1571159..1573216 (-) 2058 WP_078152284.1 penicillin-binding protein 2B -
  AD178_RS08000 (SAMEA1463109_01616) - 1573416..1574267 (+) 852 WP_000360333.1 SIS domain-containing protein -
  AD178_RS08005 (SAMEA1463109_01617) - 1574283..1575167 (-) 885 WP_000222983.1 ROK family protein -
  AD178_RS08010 (SAMEA1463109_01618) - 1575185..1576102 (-) 918 WP_001281499.1 dihydrodipicolinate synthase family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21751.91 Da        Isoelectric Point: 4.4935

>NTDB_id=1037557 AD178_RS07990 WP_000966755.1 1570552..1571148(-) (recR) [Streptococcus pneumoniae strain PT8105 isolate 2RLC4]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSDDDVNEFAKNLLSAKRELTYCSICGRLTDDDPCSICTDPTRDQT
TILVLEDSRDVAAMENIQEYRGLYHVLHGLISPMNGISPDDINLKSLMTRLMDSEVSEVIVATNATADGEATSMYLSRLL
KPAGIKVTRLARGLAVGADIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1037557 AD178_RS07990 WP_000966755.1 1570552..1571148(-) (recR) [Streptococcus pneumoniae strain PT8105 isolate 2RLC4]
ATGCTTTATCCAACACCTATTGCTAAGCTGATTGACAGTTATTCCAAGTTACCAGGTATCGGGATTAAGACGGCTACGCG
TCTGGCCTTTTATACGATTGGGATGTCTGATGACGATGTCAATGAATTTGCAAAAAATCTCCTTTCTGCTAAGAGAGAAT
TGACCTACTGTTCTATTTGTGGACGTTTGACAGACGACGATCCTTGTTCTATCTGTACCGATCCGACTCGTGACCAGACA
ACGATTTTGGTGCTAGAGGATAGTCGTGATGTGGCGGCCATGGAAAATATCCAAGAATACCGTGGACTCTATCATGTCTT
GCATGGGCTCATTTCTCCCATGAATGGTATCAGTCCAGACGATATCAATCTCAAGAGTCTCATGACTCGTCTTATGGATA
GTGAGGTTTCAGAAGTAATCGTAGCAACCAATGCCACAGCAGATGGGGAAGCGACTTCCATGTATCTTTCCCGTTTACTC
AAGCCAGCTGGGATCAAGGTTACGCGCCTGGCACGAGGCCTTGCTGTGGGAGCAGATATCGAGTATGCGGACGAAGTGAC
CCTCTTACGGGCTATTGAAAATCGAACAGAGTTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

98.99

100

0.99
  recR Bacillus subtilis subsp. subtilis str. 168

62.121

100

0.621
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.744

98.485

0.49

Multiple sequence alignment