Detailed information NTG0103698

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: KHU1_RS18155
• Genome accession: NZ_CP007242
• Coordinates: 3779991..3781103 (+)
• Length: 370 a.a.
• NCBI ID: WP_007409910.1
• Uniprot ID: A7Z0C6
• Organism: Bacillus amyloliquefaciens KHG19
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3774991..3786103

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KHU1_RS18130 (KHU1_3544)	rnpA	3775703..3776053 (-)	351	WP_004392944.1	ribonuclease P protein component	-
KHU1_RS19685	rpmH	3776207..3776341 (-)	135	WP_003178075.1	50S ribosomal protein L34	-
KHU1_RS18140 (KHU1_3546)	dnaA	3776964..3778304 (+)	1341	WP_007409908.1	chromosomal replication initiator protein DnaA	-
KHU1_RS18145 (KHU1_3547)	dnaN	3778489..3779625 (+)	1137	WP_014416704.1	DNA polymerase III subunit beta	-
KHU1_RS18150 (KHU1_3548)	rlbA	3779760..3779975 (+)	216	WP_004392910.1	ribosome maturation protein RlbA	-
KHU1_RS18155 (KHU1_3549)	recF	3779991..3781103 (+)	1113	WP_007409910.1	DNA replication/repair protein RecF	Machinery gene
KHU1_RS18160 (KHU1_3550)	remB	3781121..3781366 (+)	246	WP_004392908.1	extracellular matrix regulator RemB	-
KHU1_RS18165 (KHU1_3551)	gyrB	3781423..3783339 (+)	1917	WP_014720600.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
KHU1_RS18170 (KHU1_3552)	gyrA	3783555..3786014 (+)	2460	WP_015239009.1	DNA gyrase subunit A	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42430.36 Da
• Isoelectric Point: 7.0882

>NTDB_id=103698 KHU1_RS18155 WP_007409910.1 3779991..3781103(+) (recF) [Bacillus amyloliquefaciens KHG19]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGTLVK

Nucleotide

• Length: 1113 bp

>NTDB_id=103698 KHU1_RS18155 WP_007409910.1 3779991..3781103(+) (recF) [Bacillus amyloliquefaciens KHG19]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGAAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCTGAGGATTTAAATCTCGTCAAAGGAAGCCCCCAGGTGAGGAGGAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTACCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACGTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACAAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTACGTTAGTGAAGTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-348)

3D structure

• AlphaFold DB: A7Z0C6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	94.324	100	0.943
recF	Streptococcus pneumoniae R6	44.809	98.919	0.443