Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ACB348_RS01520 Genome accession   NZ_CP167002
Coordinates   275961..276887 (+) Length   308 a.a.
NCBI ID   WP_111704907.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Isolate 30     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 270961..281887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB348_RS01510 (ACB348_01510) amiA 272424..274394 (+) 1971 WP_136076151.1 peptide ABC transporter substrate-binding protein Regulator
  ACB348_RS01515 (ACB348_01515) amiC 274459..275961 (+) 1503 WP_011017334.1 ABC transporter permease Regulator
  ACB348_RS01520 (ACB348_01520) amiD 275961..276887 (+) 927 WP_111704907.1 oligopeptide ABC transporter permease OppC Regulator
  ACB348_RS01525 (ACB348_01525) amiE 276896..277966 (+) 1071 WP_009880666.1 ABC transporter ATP-binding protein Regulator
  ACB348_RS01530 (ACB348_01530) amiF 277959..278882 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  ACB348_RS01535 (ACB348_01535) - 278920..279003 (-) 84 Protein_255 IS3 family transposase -
  ACB348_RS01540 (ACB348_01540) - 279137..279447 (-) 311 Protein_256 IS3 family transposase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34892.83 Da        Isoelectric Point: 8.5670

>NTDB_id=1036910 ACB348_RS01520 WP_111704907.1 275961..276887(+) (amiD) [Streptococcus pyogenes strain Isolate 30]
MESIDKSKFRFVERDSEASEVIDTPAYSYWKSVFRQFFSKKSTVFMLVILVTVLMMSFIYPMFANYDFNDVSNINDFSKR
YIWPNAEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINITIGVVLGAIWGVSKTFDKVMIEIYNIISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAVKNLLPQLVSVIMTMLSQMLPVYVS
SEAFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1036910 ACB348_RS01520 WP_111704907.1 275961..276887(+) (amiD) [Streptococcus pyogenes strain Isolate 30]
ATGGAATCGATTGATAAATCTAAATTTCGATTTGTTGAGCGCGATAGTGAAGCCTCCGAAGTGATTGATACCCCTGCTTA
TTCTTACTGGAAATCAGTGTTTCGTCAGTTTTTTTCTAAAAAATCTACAGTCTTTATGCTCGTGATTTTAGTGACAGTCT
TGATGATGAGCTTTATTTATCCAATGTTTGCCAACTACGACTTTAATGACGTTAGTAATATCAATGACTTTTCAAAGCGT
TATATTTGGCCAAATGCAGAGTACTGGTTTGGAACCGACAAAAATGGGCAATCTCTGTTTGATGGTGTTTGGTATGGGGC
ACGTAATTCTATTTTAATCTCAGTTATAGCGACACTAATTAATATCACCATTGGGGTAGTGTTAGGAGCCATATGGGGAG
TTTCTAAAACATTTGATAAAGTTATGATTGAAATTTATAACATTATCTCAAATATCCCTTCTATGCTTATTATCATTGTT
TTGACCTATTCATTAGGTGCAGGATTTTGGAATTTGATTCTAGCTTTCTGTATCACTGGATGGATTGGTGTCGCCTACTC
CATCCGTGTTCAAATCTTGCGTTACCGTGATTTAGAATACAACCTTGCTAGTCAAACTTTGGGAACACCAATGTACAAGA
TTGCTGTTAAGAACCTGCTGCCTCAATTGGTTTCAGTTATCATGACTATGTTGTCACAAATGCTACCAGTTTATGTATCT
TCTGAGGCCTTCTTATCCTTCTTTGGGATTGGTTTACCAACCACCACTCCAAGTTTAGGACGTTTGATTGCTAATTATTC
AAGCAACTTAACAACAAATGCCTACCTCTTTTGGATTCCCTTAGTAACATTGATTTTAGTATCGTTACCACTATACATTG
TCGGACAAAACTTGGCTGATGCCAGTGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

74.026

100

0.74
  amiD Streptococcus thermophilus LMG 18311

73.377

100

0.734
  amiD Streptococcus thermophilus LMD-9

73.377

100

0.734

Multiple sequence alignment