Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   LQ127_RS04365 Genome accession   NZ_OW967966
Coordinates   913534..914010 (-) Length   158 a.a.
NCBI ID   WP_021553055.1    Uniprot ID   -
Organism   Escherichia coli isolate 648     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 908534..919010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ127_RS04325 (AI2858V1_0852) - 908600..909583 (-) 984 WP_001361242.1 KpsF/GutQ family sugar-phosphate isomerase -
  LQ127_RS04330 (AI2858V1_0853) - 910394..910564 (-) 171 Protein_856 IS110 family transposase -
  LQ127_RS04335 - 910906..911748 (-) 843 Protein_857 DUF4942 domain-containing protein -
  LQ127_RS04340 - 911833..912027 (-) 195 WP_024181941.1 DUF957 domain-containing protein -
  LQ127_RS04345 - 912106..912255 (-) 150 Protein_859 DUF5983 family protein -
  LQ127_RS04350 (AI2858V1_0857) - 912252..912629 (-) 378 WP_001564063.1 TA system toxin CbtA family protein -
  LQ127_RS04355 (AI2858V1_0858) - 912719..913087 (-) 369 WP_038432125.1 type IV toxin-antitoxin system YeeU family antitoxin -
  LQ127_RS04360 (AI2858V1_0860) - 913250..913471 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  LQ127_RS04365 (AI2858V1_0861) radC 913534..914010 (-) 477 WP_021553055.1 RadC family protein Machinery gene
  LQ127_RS04370 (AI2858V1_0862) - 914026..914505 (-) 480 WP_001564060.1 antirestriction protein -
  LQ127_RS04375 (AI2858V1_0863) - 914771..915589 (-) 819 WP_001175165.1 DUF932 domain-containing protein -
  LQ127_RS04380 (AI2858V1_0864) - 915679..915912 (-) 234 WP_001278293.1 DUF905 family protein -
  LQ127_RS04385 (AI2858V1_0865) - 915918..916595 (-) 678 WP_001564058.1 hypothetical protein -
  LQ127_RS04390 (AI2858V1_0866) - 916746..917426 (-) 681 WP_001278649.1 WYL domain-containing protein -
  LQ127_RS04395 (AI2858V1_0868) - 917629..918513 (-) 885 WP_001564055.1 YfjP family GTPase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17603.23 Da        Isoelectric Point: 7.6151

>NTDB_id=1036768 LQ127_RS04365 WP_021553055.1 913534..914010(-) (radC) [Escherichia coli isolate 648]
MQQISFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1036768 LQ127_RS04365 WP_021553055.1 913534..914010(-) (radC) [Escherichia coli isolate 648]
ATGCAACAGATTTCCTTTCTGCCCGGAGCGATGACGCCCGGCGAGCGCAGTCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment