Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   KHU1_RS14215 Genome accession   NZ_CP007242
Coordinates   2965020..2965652 (-) Length   210 a.a.
NCBI ID   WP_007410060.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens KHG19     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2960020..2970652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHU1_RS14195 (KHU1_2768) - 2961047..2961232 (-) 186 WP_003151806.1 YvzF family protein -
  KHU1_RS14200 (KHU1_2769) - 2961348..2962790 (+) 1443 WP_020954311.1 spore germination protein -
  KHU1_RS14205 (KHU1_2770) - 2962765..2963865 (+) 1101 WP_007410062.1 spore germination protein -
  KHU1_RS14210 (KHU1_2771) - 2963862..2964977 (+) 1116 WP_007410061.1 Ger(x)C family spore germination protein -
  KHU1_RS14215 (KHU1_2772) vraR 2965020..2965652 (-) 633 WP_007410060.1 response regulator transcription factor Regulator
  KHU1_RS14220 (KHU1_2773) liaS 2965630..2966712 (-) 1083 WP_003151796.1 two-component system sensor histidine kinase LiaS -
  KHU1_RS14225 (KHU1_2774) liaF 2966709..2967440 (-) 732 WP_012118409.1 cell wall-active antibiotics response protein LiaF -
  KHU1_RS14230 (KHU1_2775) - 2967467..2968336 (-) 870 WP_007410058.1 LiaG family protein -
  KHU1_RS14235 (KHU1_2776) liaH 2968442..2969119 (-) 678 WP_007410057.1 stress responsive protein LiaH -
  KHU1_RS14240 (KHU1_2777) - 2969133..2969513 (-) 381 WP_007410056.1 protein liaI -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22963.64 Da        Isoelectric Point: 4.9953

>NTDB_id=103670 KHU1_RS14215 WP_007410060.1 2965020..2965652(-) (vraR) [Bacillus amyloliquefaciens KHG19]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVAGEASDGQQGVDLAAKLLPDVILMDLVMDGMDGIEATKQICATLNDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIAEAIRAAAKGEPKLESKVAGKVLSRLRHSENQLPHETLTKRELEILCLV
AEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVT

Nucleotide


Download         Length: 633 bp        

>NTDB_id=103670 KHU1_RS14215 WP_007410060.1 2965020..2965652(-) (vraR) [Bacillus amyloliquefaciens KHG19]
GTGATTCGAGTGTTACTGATTGATGATCATGAAATGGTCAGGATGGGTCTGGCCGCATTTTTAGAAGCACAGCCGGACAT
TGAAGTCGCCGGTGAAGCATCAGACGGGCAGCAGGGCGTCGATCTGGCCGCAAAGCTTTTGCCGGATGTGATTTTAATGG
ACCTCGTCATGGACGGCATGGACGGTATCGAAGCGACAAAACAGATCTGCGCGACACTCAATGACCCGAAAATCATCGTG
CTGACGAGCTTTATTGATGACGACAAAGTGTATCCGGTGATCGAAGCGGGAGCGCTCAGCTATTTGCTGAAAACGTCCAA
GGCGGCAGAAATAGCCGAAGCCATCAGAGCGGCTGCCAAGGGCGAACCGAAGCTTGAATCGAAGGTGGCGGGAAAAGTGC
TGTCAAGGCTGCGCCATTCAGAGAATCAGCTTCCGCATGAAACGCTGACAAAAAGAGAACTGGAAATCCTCTGTCTCGTC
GCGGAAGGCAAGACGAATAAAGAGATTGGTGAAGAGCTGTTCATTACGATTAAAACGGTGAAAACCCACATTACGAATAT
ATTGTCAAAGCTTGATGTCAGTGACCGCACGCAGGCAGCCGTATATGCCCACCGCAATCATCTCGTGACATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

50

99.048

0.495
  degU Bacillus subtilis subsp. subtilis str. 168

36.771

100

0.39

Multiple sequence alignment