Detailed information NTG1036670

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB8618_RS13595
• Genome accession: NZ_CP166996
• Coordinates: 2848850..2849761 (+)
• Length: 303 a.a.
• NCBI ID: WP_413400822.1
• Uniprot ID: -
• Organism: Pseudoalteromonas sp. RW-H-Ap-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2843850..2854761

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB8618_RS13575 (AB8618_13560)	ampD	2844090..2844635 (-)	546	WP_413400818.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
AB8618_RS13580 (AB8618_13565)	nadC	2845035..2845880 (+)	846	WP_413400819.1	carboxylating nicotinate-nucleotide diphosphorylase	-
AB8618_RS13585 (AB8618_13570)	-	2846430..2846891 (+)	462	WP_413400820.1	pilin	-
AB8618_RS13590 (AB8618_13575)	pilC	2846985..2848214 (+)	1230	WP_413400821.1	type II secretion system F family protein	Machinery gene
AB8618_RS13595 (AB8618_13580)	pilD	2848850..2849761 (+)	912	WP_413400822.1	prepilin peptidase	Machinery gene
AB8618_RS13600 (AB8618_13585)	coaE	2849764..2850393 (+)	630	WP_413400823.1	dephospho-CoA kinase	-
AB8618_RS13605 (AB8618_13590)	pilB	2850529..2852205 (+)	1677	WP_413400824.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AB8618_RS13610 (AB8618_13595)	yacG	2852271..2852501 (+)	231	WP_054202591.1	DNA gyrase inhibitor YacG	-
AB8618_RS13615 (AB8618_13600)	-	2852561..2853049 (-)	489	WP_413400825.1	Spy/CpxP family protein refolding chaperone	-
AB8618_RS13620 (AB8618_13605)	-	2853216..2853905 (+)	690	WP_413400826.1	response regulator	-

Sequence

Protein

• Length: 303 a.a.
• Molecular weight: 33335.55 Da
• Isoelectric Point: 6.8237

>NTDB_id=1036670 AB8618_RS13595 WP_413400822.1 2848850..2849761(+) (pilD) [Pseudoalteromonas sp. RW-H-Ap-1]
MQSIFIDISNAMQANLWFYLTTIGLVSVCIGSFLNVVIYRLPLMMQKEWQTECRLLLADELTSPKAEQTTSQTTGTFNLV
KPNSCCPKCKAAIKPWQNIPIFSWLFLKGKCATCDNPISVRYPTVEAITAILSLVVAYTFGATEQALLYIVVTWALVALT
FIDIDHMLLPDQLTLPLLWLALIASVMGYTIAPSDAIIGAACGYLSLWSVFWLFKLITGKEGMGYGDFKLLAVFGALLGW
QSLLTIILLSSVVGAVIGVALLSIQGKDKATPIPFGPYLAIAGWITMLWGTQLQNSYFNFIGY

Nucleotide

• Length: 912 bp

>NTDB_id=1036670 AB8618_RS13595 WP_413400822.1 2848850..2849761(+) (pilD) [Pseudoalteromonas sp. RW-H-Ap-1]
ATGCAAAGTATTTTTATTGATATCAGCAACGCGATGCAGGCTAACTTATGGTTTTATTTGACCACGATTGGCCTTGTGAG
TGTATGTATTGGTAGCTTTTTAAATGTGGTGATATATCGCTTGCCACTGATGATGCAAAAAGAATGGCAAACTGAATGCC
GCTTATTATTAGCCGATGAACTAACCAGCCCAAAGGCTGAACAGACCACTTCACAAACTACTGGCACGTTTAATTTAGTT
AAGCCCAACTCATGTTGTCCTAAGTGCAAAGCAGCCATTAAACCATGGCAAAACATTCCTATATTTAGTTGGTTATTTTT
AAAAGGTAAATGCGCAACCTGTGATAACCCAATATCAGTGCGTTACCCAACCGTTGAAGCCATTACCGCTATTTTGAGCC
TAGTTGTTGCTTACACTTTTGGCGCAACTGAGCAGGCTTTATTGTACATTGTAGTGACTTGGGCATTGGTAGCACTGACT
TTTATTGATATTGATCACATGCTACTGCCAGATCAGCTTACTTTGCCGCTTTTATGGCTGGCGTTAATCGCCTCAGTTAT
GGGTTATACCATAGCCCCTAGCGATGCCATTATTGGTGCAGCATGTGGTTATTTAAGCTTGTGGAGTGTGTTTTGGCTGT
TTAAGCTAATTACTGGCAAAGAAGGTATGGGTTATGGCGACTTTAAATTACTGGCGGTATTTGGCGCACTGCTGGGTTGG
CAATCATTATTGACCATTATTTTACTCTCAAGCGTAGTTGGCGCTGTTATTGGCGTTGCCCTACTGAGTATTCAAGGTAA
AGACAAAGCAACGCCTATTCCTTTTGGTCCTTATTTAGCAATAGCCGGTTGGATAACTATGCTGTGGGGTACACAACTAC
AAAACAGCTATTTTAATTTTATTGGTTACTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (26-140)

• Type IV leader peptidase family (Peptidase_A24) (151-259)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	50.171	96.7	0.485
pilD	Acinetobacter nosocomialis M2	50.171	96.7	0.485
pilD	Vibrio cholerae strain A1552	50.35	94.389	0.475
pilD	Vibrio campbellii strain DS40M4	48.464	96.7	0.469
pilD	Neisseria gonorrhoeae MS11	44.03	88.449	0.389