Detailed information NTG1036516

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACA087_RS27580
• Genome accession: NZ_CP166975
• Coordinates: 6063931..6064803 (-)
• Length: 290 a.a.
• NCBI ID: WP_038575692.1
• Uniprot ID: A0AAJ0ZPM1
• Organism: Pseudomonas chlororaphis strain Pc01-6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6058931..6069803

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACA087_RS27550 (ACA087_27545)	-	6059781..6061217 (-)	1437	WP_038575686.1	undecaprenyl-phosphate glucose phosphotransferase	-
ACA087_RS27555 (ACA087_27550)	-	6061672..6062139 (+)	468	WP_371355343.1	FAD/FMN-containing dehydrogenase	-
ACA087_RS27560 (ACA087_27555)	-	6062136..6062825 (+)	690	WP_081359729.1	energy-coupling factor ABC transporter permease	-
ACA087_RS27565 (ACA087_27560)	-	6062891..6063106 (+)	216	WP_009050911.1	hypothetical protein	-
ACA087_RS27570 (ACA087_27565)	yacG	6063111..6063314 (-)	204	WP_009045670.1	DNA gyrase inhibitor YacG	-
ACA087_RS27575 (ACA087_27570)	coaE	6063311..6063934 (-)	624	WP_009045669.1	dephospho-CoA kinase	-
ACA087_RS27580 (ACA087_27575)	pilD	6063931..6064803 (-)	873	WP_038575692.1	A24 family peptidase	Machinery gene
ACA087_RS27585 (ACA087_27580)	pilC	6064806..6066023 (-)	1218	WP_038575694.1	type II secretion system F family protein	Machinery gene
ACA087_RS27590 (ACA087_27585)	-	6066388..6066804 (+)	417	WP_371355344.1	pilin	-
ACA087_RS27595 (ACA087_27590)	-	6067092..6067448 (+)	357	WP_009050906.1	BON domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32054.16 Da
• Isoelectric Point: 7.9954

>NTDB_id=1036516 ACA087_RS27580 WP_038575692.1 6063931..6064803(-) (pilD) [Pseudomonas chlororaphis strain Pc01-6]
MSLTEVLASYPLVFVASMLVLGLIVGSFLNVLIWRLPKMLERDWHAQARDILGLPVEPAGPTYNLLLPHSQCPHCAHSIR
PWENIPVFSYLLLRGRCSACQAPIGRRYPLVELTCGLASAFVAWHFGFGWQAVLMLLLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIVNGFELFVSLHDALWGAVAGYLCLWSVYWSFKLLTGKEGMGHGDFKLLAMFGAWGGWQILPMTLLLASLTG
ALAGIALLRRNRAQMSTPIPFGPFLAIAGWIALLWGGQITSSYLQFVGFR

Nucleotide

• Length: 873 bp

>NTDB_id=1036516 ACA087_RS27580 WP_038575692.1 6063931..6064803(-) (pilD) [Pseudomonas chlororaphis strain Pc01-6]
ATGTCATTGACTGAGGTCCTGGCCAGCTACCCGCTGGTCTTCGTAGCATCGATGCTGGTCCTGGGACTGATTGTCGGCAG
CTTTCTCAATGTGCTGATCTGGCGTCTGCCAAAGATGCTCGAGCGCGATTGGCACGCCCAGGCCCGTGACATCCTGGGGC
TGCCCGTCGAGCCTGCCGGGCCGACCTACAACCTGCTGCTCCCGCACTCCCAGTGCCCTCACTGCGCACATTCGATCCGC
CCCTGGGAAAACATCCCAGTGTTCAGCTACCTGCTGCTGCGCGGACGCTGCTCCGCGTGCCAGGCACCGATCGGCCGGCG
CTACCCGCTGGTGGAGCTGACCTGCGGCCTGGCCTCGGCATTCGTGGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGTCC
TGATGCTGCTGCTGAGCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCATCAACTGTTGCCCGACGTGCTGGTG
CTGCCGCTGTTGTGGCTGGGCCTGATTGTCAATGGCTTCGAGCTGTTCGTCAGCCTCCACGATGCGCTGTGGGGCGCCGT
GGCCGGCTACCTGTGCCTGTGGTCGGTATACTGGTCGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGGCACGGTGATT
TCAAGCTGTTGGCCATGTTCGGCGCCTGGGGCGGCTGGCAGATTCTGCCGATGACCCTGCTGCTGGCCTCACTGACGGGA
GCCCTGGCGGGGATCGCCCTGCTGCGCCGCAACCGTGCGCAAATGTCCACGCCTATCCCTTTCGGTCCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCAGTTCCTATTTGCAGTTTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.465	97.931	0.514
pilD	Vibrio campbellii strain DS40M4	52.297	97.586	0.51
pilD	Acinetobacter baumannii D1279779	50.545	94.828	0.479
pilD	Acinetobacter nosocomialis M2	49.818	94.828	0.472
pilD	Neisseria gonorrhoeae MS11	47.794	93.793	0.448