Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACA097_RS22875 Genome accession   NZ_CP166971
Coordinates   4917768..4918403 (+) Length   211 a.a.
NCBI ID   WP_043253457.1    Uniprot ID   A0A024HKS2
Organism   Pseudomonas sp. QL9     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4912768..4923403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA097_RS22855 (ACA097_22845) lolD 4912846..4913529 (+) 684 WP_043253461.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  ACA097_RS22860 (ACA097_22850) - 4913534..4914784 (+) 1251 WP_043253460.1 lipoprotein-releasing ABC transporter permease subunit -
  ACA097_RS22865 (ACA097_22855) - 4914821..4915351 (-) 531 WP_371366201.1 DUF2062 domain-containing protein -
  ACA097_RS22870 (ACA097_22860) comA 4915476..4917695 (+) 2220 WP_371366203.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACA097_RS22875 (ACA097_22865) exbB 4917768..4918403 (+) 636 WP_043253457.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACA097_RS22880 (ACA097_22870) - 4918400..4918846 (+) 447 WP_043253456.1 biopolymer transporter ExbD -
  ACA097_RS22885 (ACA097_22875) lpxK 4918846..4919844 (+) 999 WP_371366206.1 tetraacyldisaccharide 4'-kinase -
  ACA097_RS22890 (ACA097_22880) - 4919889..4920074 (+) 186 WP_009621404.1 Trm112 family protein -
  ACA097_RS22895 (ACA097_22885) kdsB 4920095..4920859 (+) 765 WP_371366209.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACA097_RS22900 (ACA097_22890) - 4920859..4921323 (+) 465 WP_371366211.1 low molecular weight protein-tyrosine-phosphatase -
  ACA097_RS22905 (ACA097_22895) murB 4921320..4922339 (+) 1020 WP_371366213.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22919.08 Da        Isoelectric Point: 7.2806

>NTDB_id=1036489 ACA097_RS22875 WP_043253457.1 4917768..4918403(+) (exbB) [Pseudomonas sp. QL9]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRRSRVAPPQLLGQVWKQIKDKKMNSQALKELKANSPLGEVLAAGLVN
SKHGREIMKECIEESAGRVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFSAFMGEGMANAPVLAGGISKALVTTAS
GLIVAIPAVFFHRYLLRRVDELVVAMEQDAIKLVEMVQGDREVDLSEDGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1036489 ACA097_RS22875 WP_043253457.1 4917768..4918403(+) (exbB) [Pseudomonas sp. QL9]
GTGTGGGAACTGGTTCAAGCTGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCCGCCACCGCCATCGTCGC
CGAACGACTCTGGACCCTGCGCCGCAGTCGCGTCGCGCCGCCCCAACTGCTGGGCCAGGTGTGGAAGCAGATCAAGGACA
AGAAGATGAACAGCCAGGCCTTGAAGGAGCTCAAGGCCAATTCGCCGCTGGGTGAGGTCCTCGCCGCCGGCCTGGTCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGAGTCCGCCGGGCGGGTGATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGTACCATCGCCGCCATGGCCCCGTTGCTTGGCCTGCTCGGTACCGTGTTCGGCATGATCCAGATCTTCA
GCGCCTTCATGGGCGAGGGCATGGCCAACGCGCCGGTGCTCGCCGGCGGTATCTCCAAGGCCCTGGTCACCACCGCTTCC
GGCCTGATCGTGGCCATCCCCGCAGTGTTCTTCCATCGCTACCTGCTGCGCCGCGTCGACGAATTGGTGGTGGCCATGGA
GCAGGACGCCATCAAGCTGGTGGAGATGGTCCAGGGTGATCGCGAAGTCGATCTGTCCGAGGATGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A024HKS2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.621

100

0.796

Multiple sequence alignment