Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   ACA346_RS05665 Genome accession   NZ_CP166970
Coordinates   1107737..1108963 (-) Length   408 a.a.
NCBI ID   WP_130555333.1    Uniprot ID   A0A4Q8L0K7
Organism   Streptococcus parasuis strain NX1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1102737..1113963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA346_RS05640 (ACA346_05640) - 1102804..1102986 (+) 183 WP_002934978.1 4-oxalocrotonate tautomerase -
  ACA346_RS05650 (ACA346_05650) lepA 1104724..1106556 (-) 1833 WP_217373802.1 translation elongation factor 4 -
  ACA346_RS05655 (ACA346_05655) ndk 1106654..1107067 (-) 414 WP_318150306.1 nucleoside-diphosphate kinase -
  ACA346_RS05660 (ACA346_05660) yihA 1107089..1107676 (-) 588 WP_130555334.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  ACA346_RS05665 (ACA346_05665) clpX 1107737..1108963 (-) 1227 WP_130555333.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ACA346_RS05670 (ACA346_05670) - 1109161..1109673 (-) 513 WP_277843753.1 dihydrofolate reductase -
  ACA346_RS05675 (ACA346_05675) - 1109883..1110722 (-) 840 WP_130555330.1 thymidylate synthase -
  ACA346_RS05680 (ACA346_05680) - 1110775..1111098 (-) 324 WP_217373805.1 hypothetical protein -
  ACA346_RS05685 (ACA346_05685) - 1111300..1112652 (-) 1353 WP_418126267.1 IS66-like element short variant transposase -
  ACA346_RS05690 (ACA346_05690) - 1112606..1112812 (-) 207 WP_002939754.1 hypothetical protein -
  ACA346_RS05695 (ACA346_05695) tnpB 1112864..1113214 (-) 351 WP_024407179.1 IS66 family insertion sequence element accessory protein TnpB -
  ACA346_RS05700 (ACA346_05700) - 1113195..1113380 (-) 186 WP_134973003.1 hypothetical protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45477.05 Da        Isoelectric Point: 4.5673

>NTDB_id=1036433 ACA346_RS05665 WP_130555333.1 1107737..1108963(-) (clpX) [Streptococcus parasuis strain NX1]
MAIKHTQELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQVDTKN
ILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNRAIDEKESYMQHIIADDIQKFGIIPELIGRLPVLAALDQLTTEDLIRIL
TEPKNALVKQYQTLLSYDNVELEFDQDALEEIAKKAIERKTGARGLRSIIEETMMDVMFEVPSQENVKRVRVTKDAVDGK
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1036433 ACA346_RS05665 WP_130555333.1 1107737..1108963(-) (clpX) [Streptococcus parasuis strain NX1]
ATGGCTATCAAGCATACACAAGAGCTTATCTATTGCTCATTTTGTGGTAAAAACCAAGAAGAAGTTAAAAAAATTATTGC
AGGAAATAATGTTTTCATTTGTAATGAGTGTGTTGAGTTAGCTCAAGAAATCATTCGTGAAGAATTGGCTGAAGAAGTAC
TGACAGATTTGGCAGACACACCAAAGCCACAAGAATTACTCAATATTTTAAATAATTATGTCATTGGACAAGATCGTGCT
AAACGTGCATTGGCAGTGGCTGTTTATAATCACTACAAACGTATTAATTTCCAAGATAGTCGCGATGAAAATGATGTTGA
TTTGCAAAAATCTAACATCTTGATGATTGGCCCGACTGGTTCAGGAAAAACCTTCCTAGCTCAGACCTTGGCTAAAAGTT
TGAATGTCCCGTTTGCTATTGCTGATGCGACCGCTCTTACTGAGGCTGGTTATGTGGGTGAAGATGTTGAAAATATTTTA
CTTAAATTATTGCAGGCAGCAGATTTTAACATTGACCGTGCTGAAAGAGGTATCATCTATGTGGATGAAATTGATAAAAT
TGCCAAAAAAGGTGAAAATGTGTCCATTACCCGTGACGTCTCGGGTGAAGGTGTCCAACAAGCTCTCTTAAAAATTATTG
AAGGAACCGTTGCCAGTGTACCTCCACAAGGTGGACGAAAACACCCTAATCAAGAAATGATTCAAGTCGATACGAAAAAC
ATTCTTTTCATCGTTGGCGGTGCGTTTGATGGTATCGAGGAAATTGTTAAGCAACGATTAGGAGAGAAAATCATTGGTTT
TGGTCAAAACAATCGTGCTATTGATGAAAAAGAATCATATATGCAACATATCATTGCTGATGATATTCAAAAATTTGGTA
TTATTCCTGAGTTGATTGGACGATTACCTGTTTTGGCAGCCTTAGATCAATTAACGACAGAGGATTTGATTCGTATTTTG
ACTGAGCCGAAGAATGCTTTGGTAAAACAGTACCAAACTCTTTTATCCTACGATAATGTGGAGTTAGAATTTGACCAGGA
TGCCTTGGAGGAAATTGCCAAAAAGGCTATTGAACGGAAAACAGGTGCACGGGGACTTCGTTCGATTATTGAAGAAACCA
TGATGGATGTGATGTTTGAAGTTCCTAGTCAAGAGAATGTAAAACGTGTTCGTGTTACAAAAGATGCAGTAGATGGTAAG
GAAAAACCTTTGCTAGAAACTGCTTAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q8L0K7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

84.108

100

0.843
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.711

98.529

0.569

Multiple sequence alignment