Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   ACA346_RS02495 Genome accession   NZ_CP166970
Coordinates   487307..487996 (+) Length   229 a.a.
NCBI ID   WP_418127078.1    Uniprot ID   -
Organism   Streptococcus parasuis strain NX1     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 482307..492996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA346_RS02470 (ACA346_02470) - 482637..483980 (+) 1344 WP_216807102.1 DEAD/DEAH box helicase -
  ACA346_RS02475 (ACA346_02475) - 483999..484223 (+) 225 WP_130554666.1 DUF4059 family protein -
  ACA346_RS02480 (ACA346_02480) trxB 484236..485153 (+) 918 WP_318150800.1 thioredoxin-disulfide reductase -
  ACA346_RS02485 (ACA346_02485) - 485163..485702 (+) 540 WP_174845818.1 YceD family protein -
  ACA346_RS02490 (ACA346_02490) gndA 485798..487225 (+) 1428 WP_217374724.1 NADP-dependent phosphogluconate dehydrogenase -
  ACA346_RS02495 (ACA346_02495) covR 487307..487996 (+) 690 WP_418127078.1 response regulator transcription factor Regulator
  ACA346_RS02500 (ACA346_02500) - 488076..489206 (+) 1131 WP_418127079.1 AI-2E family transporter -
  ACA346_RS02505 (ACA346_02505) - 489408..490655 (+) 1248 WP_418127080.1 aminoacyltransferase -
  ACA346_RS02510 (ACA346_02510) - 490633..491880 (+) 1248 WP_418127081.1 aminoacyltransferase -
  ACA346_RS02515 (ACA346_02515) nrdR 491954..492445 (+) 492 WP_130554659.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26243.22 Da        Isoelectric Point: 6.0405

>NTDB_id=1036422 ACA346_RS02495 WP_418127078.1 487307..487996(+) (covR) [Streptococcus parasuis strain NX1]
MAKKILIAGKERNLSHFVSMELQKKEYIVDYASTGKEALSLAHETDFDLVLMSFQLSDMSSKKLAKELLAIKPATVMIVV
VEPTEVAEHGEDILTYAVFYVVKPFVISDLVEQISDIFRGRDFIETNCKQVHLHAAYRDLKVDFQNRTVTRGDELINLTR
REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDVPGQASYIRTVRGVGYTMRD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1036422 ACA346_RS02495 WP_418127078.1 487307..487996(+) (covR) [Streptococcus parasuis strain NX1]
ATGGCTAAGAAAATTTTGATTGCTGGGAAAGAGCGTAATCTTTCACATTTTGTTTCCATGGAACTTCAGAAGAAGGAGTA
TATCGTTGATTATGCTTCAACAGGGAAAGAAGCTTTATCACTAGCTCATGAGACAGACTTTGATTTGGTTTTGATGAGTT
TCCAATTATCCGATATGTCCAGCAAGAAGTTGGCTAAGGAGCTTCTTGCAATCAAACCTGCTACGGTGATGATTGTAGTT
GTCGAACCAACAGAAGTGGCTGAGCATGGGGAAGATATATTGACGTATGCGGTATTTTACGTTGTGAAGCCATTTGTTAT
TAGTGACTTGGTGGAACAAATTTCCGATATTTTCCGTGGTAGAGATTTTATTGAAACGAATTGTAAACAGGTTCATTTGC
ATGCGGCCTATCGAGATTTAAAAGTTGATTTTCAAAACCGAACGGTCACTCGGGGAGATGAGTTAATCAACTTGACACGG
CGAGAATATGATTTGCTGGCGACGTTGATGAATAGTCCGGAACCAGTTAGCCGAGAACAGCTTCTTGAACGGGTCTGGAA
GTATGAAGCGGCCTCTGAAACCAATGTTGTGGATGTCTATATCCGTTATCTTCGTGGAAAATTAGATGTTCCAGGACAGG
CTTCCTATATTCGGACGGTACGTGGTGTTGGCTATACCATGAGAGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

47.234

100

0.485
  covR Lactococcus lactis subsp. lactis strain DGCC12653

42.616

100

0.441

Multiple sequence alignment