Detailed information NTG1035993

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: OC617_RS13390
• Genome accession: NZ_OW443147
• Coordinates: 2941805..2942479 (-)
• Length: 224 a.a.
• NCBI ID: WP_000053959.1
• Uniprot ID: Q9KVC9
• Organism: Vibrio cholerae strain CNRVC190243 isolate YE-NCPHL-19014-PI
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2936805..2947479

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OC617_RS13355 (CNRVC190243H_02672)	-	2936985..2937764 (+)	780	WP_000042983.1	glycosyltransferase family 2 protein	-
OC617_RS13360 (CNRVC190243H_02673)	-	2937826..2938863 (-)	1038	WP_000735619.1	glycosyltransferase family 9 protein	-
OC617_RS13365 (CNRVC190243H_02674)	coaD	2938974..2939468 (+)	495	WP_000078888.1	pantetheine-phosphate adenylyltransferase	-
OC617_RS13370 (CNRVC190243H_02675)	mutM	2939565..2940374 (-)	810	WP_001114647.1	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	-
OC617_RS13375 (CNRVC190243H_02676)	-	2940384..2940866 (-)	483	WP_001266257.1	hypothetical protein	-
OC617_RS13380 (CNRVC190243H_02677)	rpmG	2941093..2941260 (-)	168	WP_001051801.1	50S ribosomal protein L33	-
OC617_RS13385 (CNRVC190243H_02678)	rpmB	2941274..2941510 (-)	237	WP_000091952.1	50S ribosomal protein L28	-
OC617_RS13390 (CNRVC190243H_02679)	radC	2941805..2942479 (-)	675	WP_000053959.1	DNA repair protein RadC	Machinery gene
OC617_RS13395 (CNRVC190243H_02680)	-	2942591..2944270 (-)	1680	WP_000953041.1	methyl-accepting chemotaxis protein	-
OC617_RS13400 (CNRVC190243H_02681)	coaBC	2944453..2945652 (+)	1200	WP_001190972.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
OC617_RS13405	-	2945718..2945855 (-)	138	WP_001889830.1	hypothetical protein	-
OC617_RS13410 (CNRVC190243H_02682)	slmA	2945811..2946401 (+)	591	WP_000918350.1	nucleoid occlusion factor SlmA	-
OC617_RS13415 (CNRVC190243H_02683)	-	2946407..2947354 (+)	948	WP_000076197.1	Kdo(2)-lipid IV(A) acyltransferase	-

Sequence

Protein

• Length: 224 a.a.
• Molecular weight: 25246.07 Da
• Isoelectric Point: 7.9636

>NTDB_id=1035993 OC617_RS13390 WP_000053959.1 2941805..2942479(-) (radC) [Vibrio cholerae strain CNRVC190243 isolate YE-NCPHL-19014-PI]
MSLKQLPTESMPREKLLQRGPQSLSDAELLAIFLRTGTQGMNVLALADLLLRDFGSLRALFCASKEQFCRHKGLGEAKFV
QLQAVLEMTQRYLAETLKRGDALTSPQQTKLYLSSVLRDRQREAFYILFLDNQHRVIRDEILFEGTIDAASVYPREVVKR
ALHHNAAAVILAHNHPSGVAEPSQADRRITDRLRDALGLVEIRVLDHFVVGDGEVVSFAERGWI

Nucleotide

• Length: 675 bp

>NTDB_id=1035993 OC617_RS13390 WP_000053959.1 2941805..2942479(-) (radC) [Vibrio cholerae strain CNRVC190243 isolate YE-NCPHL-19014-PI]
ATGAGCCTAAAACAGTTACCCACCGAATCCATGCCGCGCGAAAAATTGCTGCAACGCGGTCCACAATCATTAAGTGATGC
GGAATTGCTGGCGATTTTCCTACGTACAGGCACCCAAGGCATGAACGTGCTCGCCTTAGCTGATCTGCTGCTGCGCGATT
TTGGATCGCTGCGCGCACTGTTTTGTGCCTCCAAGGAGCAGTTTTGTCGCCACAAAGGGTTGGGCGAAGCCAAATTTGTT
CAATTACAAGCGGTATTGGAGATGACGCAGCGTTATCTCGCTGAAACCTTAAAGCGCGGTGATGCCCTCACCAGTCCGCA
GCAAACCAAACTTTATTTATCGAGCGTGCTGCGCGATCGCCAACGAGAAGCCTTCTATATATTGTTTTTGGATAACCAAC
ATCGTGTCATTCGTGATGAGATTTTATTTGAAGGGACGATTGATGCGGCGAGCGTTTACCCACGAGAAGTGGTTAAGCGG
GCGCTGCACCATAATGCCGCTGCGGTAATACTGGCACACAACCACCCATCGGGTGTTGCGGAACCGAGTCAAGCCGATCG
AAGGATCACCGATCGCCTGCGTGATGCACTCGGTTTGGTTGAGATTCGTGTGCTGGATCATTTTGTCGTCGGTGATGGGG
AAGTGGTCTCTTTTGCTGAACGTGGCTGGATATAG

Domains

Predicted by InterProScan.

• UPF0758 N-terminal (UPF0758_N) (4-79)

• RadC-like JAB domain (RadC) (104-222)

3D structure

• AlphaFold DB: Q9KVC9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	53.704	96.429	0.518
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	37.946	100	0.379