Detailed information NTG1035920

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: ACBG82_RS03805
• Genome accession: NZ_CP166881
• Coordinates: 816231..816821 (-)
• Length: 196 a.a.
• NCBI ID: WP_005709832.1
• Uniprot ID: A0A0J6XXP0
• Organism: Lacticaseibacillus rhamnosus strain YGRT11
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	808214..819341	816231..816821	within	0

Gene organization within MGE regions

Location: 808214..819341

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACBG82_RS03770 (ACBG82_03775)	-	808746..809423 (-)	678	WP_014568879.1	CPBP family intramembrane glutamic endopeptidase	-
ACBG82_RS03775 (ACBG82_03780)	-	810460..811476 (-)	1017	WP_014568877.1	IS30 family transposase	-
ACBG82_RS03780 (ACBG82_03785)	-	811968..812162 (-)	195	WP_005707490.1	hypothetical protein	-
ACBG82_RS03785 (ACBG82_03790)	cydB	812202..813221 (-)	1020	WP_014568875.1	cytochrome d ubiquinol oxidase subunit II	-
ACBG82_RS03790 (ACBG82_03795)	-	813214..814692 (-)	1479	WP_014568874.1	cytochrome ubiquinol oxidase subunit I	-
ACBG82_RS03795 (ACBG82_03800)	-	815003..815509 (+)	507	WP_005685670.1	type 1 glutamine amidotransferase domain-containing protein	-
ACBG82_RS03800 (ACBG82_03805)	rpsR	815903..816139 (-)	237	WP_003568467.1	30S ribosomal protein S18	-
ACBG82_RS03805 (ACBG82_03810)	ssb	816231..816821 (-)	591	WP_005709832.1	single-stranded DNA-binding protein	Machinery gene
ACBG82_RS03810 (ACBG82_03815)	rpsF	816851..817147 (-)	297	WP_005685677.1	30S ribosomal protein S6	-
ACBG82_RS03815 (ACBG82_03820)	ssb	817274..817705 (-)	432	WP_005690380.1	single-stranded DNA-binding protein	-
ACBG82_RS03820 (ACBG82_03825)	-	817815..817901 (+)	87	Protein_749	deoxyribose-phosphate aldolase	-
ACBG82_RS03825 (ACBG82_03830)	-	818029..818541 (-)	513	WP_223804855.1	PedC/BrcD family bacteriocin maturation disulfide isomerase	-
ACBG82_RS03830 (ACBG82_03835)	-	818636..818863 (-)	228	WP_012807316.1	hypothetical protein	-
ACBG82_RS03835 (ACBG82_03840)	-	819243..819341 (-)	99	Protein_752	single-stranded DNA-binding protein	-

Sequence

Protein

• Length: 196 a.a.
• Molecular weight: 20932.66 Da
• Isoelectric Point: 4.9056

>NTDB_id=1035920 ACBG82_RS03805 WP_005709832.1 816231..816821(-) (ssb) [Lacticaseibacillus rhamnosus strain YGRT11]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPSNAPSSNPGQ
NPAAGQNQGNNGNAANPDPFANNGKPIDISDDDLPF

Nucleotide

• Length: 591 bp

>NTDB_id=1035920 ACBG82_RS03805 WP_005709832.1 816231..816821(-) (ssb) [Lacticaseibacillus rhamnosus strain YGRT11]
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGTGGGACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGCGAACGGGAAACCGACTTCATTAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCTAACTTCACCAAGAAGGGATCATTGGTTGGTGTTGAAGGTCACATTCAAACACGT
ACTTACGATAATGCGCAAGGACAGAAAGTTTATGTGACTGAAGTTGTCGTTGAAAACTTTGCGTTACTGGAGTCACGGGC
AACCACCCAACAGCGGCCATCCGAACCTGCTAATCCTGCAGGTCAGGGAAATCAGAACTATGGCGGGGGACAGCAGTTTG
GCAACAACCAGCCGCAAAATCCGCCTAGCTTTGGCTCTCAAGGCGCCCCAAGTAATGCACCATCATCGAATCCGGGACAA
AACCCGGCAGCAGGTCAGAACCAAGGTAACAACGGTAATGCTGCTAATCCTGATCCATTTGCCAATAACGGCAAACCGAT
CGACATTTCCGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-102)

3D structure

• AlphaFold DB: A0A0J6XXP0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Latilactobacillus sakei subsp. sakei 23K	60.204	100	0.602
ssbA	Bacillus subtilis subsp. subtilis str. 168	49.749	100	0.505