Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   MMH06_RS05825 Genome accession   NZ_OV904788
Coordinates   1094595..1095191 (+) Length   198 a.a.
NCBI ID   WP_000966740.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain RMV7 isolate RMV7domi     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1089595..1100191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMH06_RS05805 (IONPJBJN_01140) - 1089665..1090582 (+) 918 WP_001281530.1 dihydrodipicolinate synthase family protein -
  MMH06_RS05810 (IONPJBJN_01141) - 1090600..1091484 (+) 885 WP_000222979.1 ROK family protein -
  MMH06_RS05815 (IONPJBJN_01142) - 1091500..1092351 (-) 852 WP_000360345.1 MurR/RpiR family transcriptional regulator -
  MMH06_RS05820 (IONPJBJN_01143) pbp2b 1092527..1094584 (+) 2058 WP_073078393.1 penicillin-binding protein PBP2B -
  MMH06_RS05825 (IONPJBJN_01144) recR 1094595..1095191 (+) 597 WP_000966740.1 recombination mediator RecR Machinery gene
  MMH06_RS05830 (IONPJBJN_01145) - 1095367..1096410 (+) 1044 WP_000814694.1 D-alanine--D-alanine ligase -
  MMH06_RS05835 (IONPJBJN_01146) murF 1096494..1097867 (+) 1374 WP_000778689.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  MMH06_RS05840 (IONPJBJN_01147) - 1097854..1098465 (+) 612 WP_000994206.1 NUDIX hydrolase -
  MMH06_RS05845 (IONPJBJN_01148) - 1098556..1099260 (+) 705 WP_001055251.1 TIGR02206 family membrane protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21740.93 Da        Isoelectric Point: 4.4995

>NTDB_id=1035867 MMH06_RS05825 WP_000966740.1 1094595..1095191(+) (recR) [Streptococcus pneumoniae strain RMV7 isolate RMV7domi]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMPDDDVNEFAKNLLAAKRELTYCSICGRLTDEDPCSICTDPTRDQT
TILVLEDSRDVAAMENIQEYHGLYHVLHGLISPMNGISPDDINLKSLMTRLMDSEVSEVIVATNATADGEATSMYLSRLL
KPAGIKVTRLARGLAVGADIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1035867 MMH06_RS05825 WP_000966740.1 1094595..1095191(+) (recR) [Streptococcus pneumoniae strain RMV7 isolate RMV7domi]
ATGCTTTATCCAACACCTATTGCTAAGTTGATTGACAGTTATTCCAAACTTCCTGGTATTGGGATTAAGACAGCAACTCG
ACTGGCCTTTTATACTATTGGAATGCCGGATGACGACGTCAATGAATTTGCAAAAAATCTTCTTGCAGCCAAGCGAGAAT
TGACCTATTGCTCTATTTGTGGACGATTAACAGATGAAGACCCGTGCTCTATCTGTACCGATCCGACTCGTGACCAGACA
ACGATTTTAGTTCTCGAAGATAGTCGCGATGTGGCAGCCATGGAGAATATCCAAGAATACCATGGACTCTATCATGTCCT
GCATGGCCTCATTTCTCCTATGAATGGTATCAGTCCAGACGATATCAATCTCAAGAGTCTCATGACTCGTCTGATGGATA
GTGAAGTTTCAGAAGTAATCGTAGCAACCAATGCTACAGCAGATGGGGAAGCGACTTCCATGTATCTTTCCCGCTTACTC
AAGCCAGCTGGGATTAAGGTCACTCGCCTGGCACGAGGCCTCGCTGTGGGAGCAGATATCGAGTATGCGGACGAAGTGAC
ACTCTTACGAGCGATTGAAAATCGGACAGAGTTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

97.98

100

0.98
  recR Bacillus subtilis subsp. subtilis str. 168

62.121

100

0.621
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.744

98.485

0.49