Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcE   Type   Machinery gene
Locus tag   KHU1_RS03960 Genome accession   NZ_CP007242
Coordinates   795731..798613 (+) Length   960 a.a.
NCBI ID   WP_042635025.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens KHG19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 790731..803613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHU1_RS03935 (KHU1_0746) - 791169..791936 (+) 768 WP_007409232.1 enoyl-CoA hydratase -
  KHU1_RS03940 (KHU1_0747) - 791961..792146 (-) 186 WP_003155259.1 YhzD family protein -
  KHU1_RS03945 (KHU1_0748) - 792252..793148 (+) 897 WP_007409231.1 ABC transporter ATP-binding protein -
  KHU1_RS03950 (KHU1_0749) - 793141..794400 (+) 1260 WP_042635023.1 ABC transporter permease -
  KHU1_RS03955 (KHU1_0750) - 794511..795734 (+) 1224 WP_042635024.1 metallophosphoesterase family protein -
  KHU1_RS03960 (KHU1_0751) sbcE 795731..798613 (+) 2883 WP_042635025.1 ATP-binding protein Machinery gene
  KHU1_RS03965 (KHU1_0752) yhaM 798687..799631 (+) 945 WP_003155251.1 3'-5' exoribonuclease YhaM -
  KHU1_RS03970 (KHU1_0753) - 799747..799974 (+) 228 WP_007409227.1 sporulation YhaL family protein -
  KHU1_RS03975 (KHU1_0754) - 800016..800867 (-) 852 WP_007409226.1 peptidylprolyl isomerase -
  KHU1_RS19285 yhzE1 801026..801112 (+) 87 WP_017417375.1 sporulation protein YhzE1 -
  KHU1_RS03985 yhzE2 801237..801323 (+) 87 WP_003155248.1 sporulation protein YhzE2 -
  KHU1_RS03990 (KHU1_0756) - 801380..801598 (-) 219 WP_003155245.1 hypothetical protein -
  KHU1_RS03995 (KHU1_0757) - 801659..802189 (-) 531 WP_007409225.1 DUF3267 domain-containing protein -
  KHU1_RS04000 (KHU1_0759) - 802400..802741 (+) 342 WP_003155243.1 YhaI family protein -
  KHU1_RS04005 (KHU1_0760) - 802738..803349 (-) 612 WP_003155240.1 HTH-type transcriptional regulator Hpr -

Sequence

Protein


Download         Length: 960 a.a.        Molecular weight: 109569.69 Da        Isoelectric Point: 7.8124

>NTDB_id=103584 KHU1_RS03960 WP_042635025.1 795731..798613(+) (sbcE) [Bacillus amyloliquefaciens KHG19]
MKITAMHIYQYGKFSDRSFQLSDSPVQVIYGLNEAGKTTLMSFIKSMLFGFPKSKKYEPKNGGVYGGTVELKHGDHGAVK
IERTKGAAEKVRVYTASGEIKDGEWLKQLLSDTDRALYEAIYSFDVFGLQEIQAFNRDKIGEFLLYSSLFGSEAAAKLDG
RLAKELDRMYKPNGRNPRLNQELDTLKRLSAQLKQAEAAEAGYHSLLEEKKSAGGRLQDAEARLKDITEEIKTVKSAIEA
KPLADKKTALESELSSYPEALKQFPKDGMHQLEKYESHLHPKAARLEGLRAKAAELRRQADLLAPNEDLLQKERQLQELS
GEQHMYESRGEQLAAIQSQIRQTSARVSSGLQQLGRHEEDGILSLNTDYEYEWRLQEAVQSAGQARERKTQLDAIFEQAR
LELEEAERKHAVTAENILDPAVKKEKEAALQSYKQTADTEGNEWQAHVQHLEKQRAKQKKLFLGAGILFIAIFAMLKEWL
PAALFTGALLLYMLSGMQKPLPSERGGPGHKKKKPAISKEAADLLQEELWRDGRHRQQLIADQAVLEQKEAAYERVIRQY
EEWEAEMAPSEKQAELFMKELGFSGSPSHLLDAYHVMKDVKKEILNKHELTIEAGRLQKLQRAFEDRVKKLSPSDGRELS
VKERLHVLLAQAERAREEAKRKQALEMDLLHAQEQMRELNEEVHYYEQQVKQLFMAAGAKNREHFCELARLNESRRETER
QLREIKTHLSGIGGKQLEPYMSRTVSELEHTVVQKETEKKTLEEKSAQLREQTALLTVKQEQLESSGLVSDLKQQTEMQK
ERVKKTAKEWAALQTVRHIIRGKMERHKKVTLPRLLETAGALYGPLTDGRYHKLYFSEADDSIMVMRKDGTVFSAGELSQ
AACEQLYAAIRFALASERESAVSLPFLLDDSFVHFDRQRLQRLFDVLNQLSEGGRQILYFTCHEHVSRSFHSGQVMRLLS

Nucleotide


Download         Length: 2883 bp        

>NTDB_id=103584 KHU1_RS03960 WP_042635025.1 795731..798613(+) (sbcE) [Bacillus amyloliquefaciens KHG19]
ATGAAAATAACGGCGATGCATATTTACCAATACGGAAAATTTTCCGACCGAAGTTTTCAGCTGTCAGATTCTCCCGTGCA
AGTGATCTACGGATTAAATGAAGCGGGCAAAACGACATTGATGTCCTTTATCAAAAGCATGCTGTTCGGTTTTCCGAAAT
CAAAAAAATACGAACCGAAAAACGGCGGGGTTTACGGCGGCACTGTGGAATTGAAGCATGGCGATCACGGCGCTGTCAAA
ATCGAACGGACAAAAGGCGCTGCCGAAAAAGTCAGAGTGTATACGGCTTCAGGCGAAATCAAGGACGGAGAATGGCTCAA
ACAGCTTCTCTCCGATACAGACCGGGCGCTGTACGAAGCGATCTATTCGTTCGATGTATTCGGACTGCAGGAGATTCAAG
CTTTTAACCGGGACAAAATCGGCGAGTTTCTCCTGTATTCGAGCTTATTCGGGTCGGAAGCGGCGGCAAAGCTTGACGGG
CGACTGGCAAAAGAACTTGACAGGATGTATAAGCCGAACGGGCGGAACCCCCGCTTAAATCAGGAGTTGGATACATTAAA
GCGGCTCAGCGCCCAGCTGAAACAGGCGGAAGCTGCGGAAGCGGGCTATCACAGCCTTCTGGAAGAGAAAAAAAGCGCCG
GCGGCCGTTTGCAGGATGCCGAAGCACGATTGAAAGACATAACTGAAGAAATCAAAACAGTAAAATCGGCGATAGAAGCA
AAGCCGCTCGCAGACAAAAAAACAGCCTTGGAAAGCGAACTTTCTTCTTATCCGGAAGCATTGAAGCAATTCCCGAAGGA
CGGAATGCATCAGCTTGAAAAATACGAATCGCATCTCCATCCGAAAGCGGCCCGTCTTGAGGGGCTTCGGGCAAAAGCGG
CTGAACTCAGGCGGCAGGCTGATCTGCTCGCTCCAAATGAGGACTTGCTGCAAAAAGAGCGGCAGCTGCAGGAGCTTTCC
GGCGAGCAGCATATGTATGAATCGCGCGGCGAACAGCTTGCAGCCATCCAATCACAGATCCGGCAGACATCTGCCCGCGT
TTCGTCAGGATTGCAGCAGCTCGGAAGACATGAGGAAGACGGCATTCTTTCACTGAACACCGATTATGAATATGAATGGC
GGCTGCAGGAAGCCGTGCAGAGCGCCGGACAGGCTAGAGAAAGAAAGACACAGCTTGATGCGATTTTCGAACAAGCGCGG
CTGGAGCTGGAAGAAGCCGAACGAAAACATGCCGTGACGGCGGAAAACATTTTGGACCCCGCTGTCAAGAAAGAAAAAGA
AGCCGCTTTACAATCATATAAGCAAACGGCTGATACAGAAGGAAACGAATGGCAGGCACATGTTCAGCATCTGGAAAAAC
AGCGCGCCAAACAAAAAAAGCTCTTTCTCGGTGCGGGCATTCTGTTCATTGCGATTTTCGCTATGTTAAAGGAATGGCTG
CCCGCCGCCCTTTTTACCGGTGCTCTGCTGCTGTATATGCTGTCCGGCATGCAAAAACCGCTGCCGTCAGAAAGAGGAGG
GCCCGGACACAAGAAAAAGAAGCCGGCGATCTCTAAAGAAGCGGCTGATCTTCTGCAGGAAGAGCTTTGGCGTGACGGCC
GGCACCGGCAGCAGCTGATTGCGGATCAAGCCGTGCTTGAACAGAAAGAAGCGGCATATGAAAGAGTCATCCGCCAATAT
GAAGAATGGGAGGCCGAAATGGCGCCGTCTGAAAAACAGGCGGAACTTTTTATGAAGGAACTGGGGTTTTCAGGAAGTCC
TTCCCATCTTCTTGACGCATATCATGTGATGAAAGATGTCAAAAAAGAAATCCTTAACAAGCATGAGCTGACCATTGAAG
CGGGCAGGCTGCAAAAGCTGCAAAGAGCATTTGAGGACCGGGTCAAAAAGCTGAGTCCTTCAGACGGAAGGGAGCTGTCC
GTAAAAGAAAGACTGCACGTTTTGCTGGCGCAGGCGGAACGGGCCCGTGAGGAAGCAAAACGAAAGCAGGCGCTCGAAAT
GGATCTGCTGCATGCACAAGAGCAAATGCGTGAATTAAACGAAGAAGTTCATTACTACGAACAGCAGGTCAAACAGCTTT
TCATGGCGGCAGGTGCAAAAAACCGCGAACACTTTTGTGAACTCGCCAGGCTGAATGAAAGCCGCCGGGAAACAGAGCGG
CAGCTGCGCGAAATCAAAACGCACTTGTCCGGCATAGGCGGAAAACAGCTGGAGCCGTACATGAGCCGCACAGTGTCCGA
ACTTGAACATACAGTCGTTCAGAAGGAAACAGAGAAAAAAACGCTTGAGGAAAAAAGCGCCCAGCTCCGTGAGCAAACCG
CTTTATTAACGGTGAAGCAAGAGCAGCTGGAGTCCTCGGGGCTTGTATCCGATTTAAAACAGCAGACAGAAATGCAGAAG
GAGCGCGTGAAAAAAACCGCTAAAGAGTGGGCCGCATTACAGACGGTCAGACACATTATCAGGGGAAAAATGGAGCGGCA
TAAAAAAGTGACGCTTCCCCGTCTGTTAGAAACCGCCGGTGCATTATACGGGCCGCTTACGGACGGACGCTATCACAAAT
TGTATTTTTCCGAGGCTGATGATTCCATTATGGTCATGCGGAAAGACGGAACGGTGTTTTCTGCAGGCGAACTGTCACAG
GCGGCATGCGAGCAGCTTTATGCGGCGATTCGTTTTGCCCTTGCGTCAGAGAGGGAATCTGCGGTATCACTGCCGTTTTT
ACTTGATGACAGTTTTGTCCATTTTGACAGGCAGCGGCTGCAGCGGCTGTTTGATGTGCTGAATCAGCTTTCAGAAGGCG
GGCGGCAGATACTTTATTTCACCTGCCATGAGCATGTCAGCCGGTCTTTTCACAGCGGACAAGTCATGCGCCTCCTGTCA
TAA

Domains

Predicted by InterProScan.

AAA domain (AAA_27)

(1-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcE Bacillus subtilis subsp. subtilis str. 168

57.158

100

0.574

Multiple sequence alignment