Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACA109_RS04785 Genome accession   NZ_CP166872
Coordinates   908247..908933 (+) Length   228 a.a.
NCBI ID   WP_078055782.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 24EBSta0529     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 903247..913933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA109_RS04750 (ACA109_04750) yqeH 903774..904874 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  ACA109_RS04755 (ACA109_04755) aroE 904888..905694 (+) 807 WP_000666767.1 shikimate dehydrogenase -
  ACA109_RS04760 (ACA109_04760) yhbY 905698..905988 (+) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  ACA109_RS04765 (ACA109_04765) nadD 905991..906560 (+) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACA109_RS04770 (ACA109_04770) yqeK 906550..907134 (+) 585 WP_001017838.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACA109_RS04775 (ACA109_04775) rsfS 907135..907488 (+) 354 WP_001088020.1 ribosome silencing factor -
  ACA109_RS04780 (ACA109_04780) - 907491..908207 (+) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  ACA109_RS04785 (ACA109_04785) comEA 908247..908933 (+) 687 WP_078055782.1 ComEA family DNA-binding protein Machinery gene
  ACA109_RS04790 (ACA109_04790) - 909025..909486 (+) 462 WP_000439693.1 ComE operon protein 2 -
  ACA109_RS04795 (ACA109_04795) comEC 909491..911692 (+) 2202 WP_197839751.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACA109_RS04800 (ACA109_04800) holA 911749..912723 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  ACA109_RS04805 (ACA109_04805) rpsT 912768..913019 (-) 252 WP_371257207.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25761.45 Da        Isoelectric Point: 9.6753

>NTDB_id=1035831 ACA109_RS04785 WP_078055782.1 908247..908933(+) (comEA) [Staphylococcus aureus strain 24EBSta0529]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1035831 ACA109_RS04785 WP_078055782.1 908247..908933(+) (comEA) [Staphylococcus aureus strain 24EBSta0529]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCTAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTGCTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
GAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.678

99.561

0.982
  comEA Staphylococcus aureus N315

98.678

99.561

0.982

Multiple sequence alignment