Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   KHU1_RS03665 Genome accession   NZ_CP007242
Coordinates   739273..739917 (+) Length   214 a.a.
NCBI ID   WP_042635008.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens KHG19     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 734273..744917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHU1_RS03650 (KHU1_0690) glpD 734442..736109 (+) 1668 WP_003155341.1 glycerol-3-phosphate dehydrogenase -
  KHU1_RS03655 (KHU1_0691) - 736249..737991 (+) 1743 WP_007409283.1 phospho-sugar mutase -
  KHU1_RS03660 (KHU1_0692) - 738137..739273 (+) 1137 WP_020955564.1 GAF domain-containing sensor histidine kinase -
  KHU1_RS03665 (KHU1_0693) vraR 739273..739917 (+) 645 WP_042635008.1 response regulator Regulator
  KHU1_RS03670 (KHU1_0694) - 739917..740441 (+) 525 WP_042635009.1 NADPH-dependent FMN reductase -
  KHU1_RS03675 (KHU1_0695) - 740455..740697 (-) 243 WP_003155335.1 YhdB family protein -
  KHU1_RS03680 (KHU1_0696) - 740887..741210 (+) 324 WP_031378436.1 DUF3889 domain-containing protein -
  KHU1_RS03685 (KHU1_0697) - 741255..742709 (-) 1455 WP_042635010.1 LysM peptidoglycan-binding domain-containing protein -
  KHU1_RS03690 (KHU1_0698) nsrR 742889..743323 (-) 435 WP_007409277.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23798.22 Da        Isoelectric Point: 5.9575

>NTDB_id=103582 KHU1_RS03665 WP_042635008.1 739273..739917(+) (vraR) [Bacillus amyloliquefaciens KHG19]
MKIVIADDHHVVRKGLRYFFATQEDIEVVGEASTGAEALQQAEKTEPDIILMDLSMPDMDGIEAAKIAAERFPDISIVVL
TSYSDQEHVIPALKAGAKAYQLKDAQPDDLVKTLREVYSGRYRLSADIVPHVLTHMVQGDQDKEKYDQLTPREKDVLQEI
AKGKSNKEIAAALFISEKTVKTHVSNLLSKLNLSDRTQAALYAVKYNVFGKAVK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=103582 KHU1_RS03665 WP_042635008.1 739273..739917(+) (vraR) [Bacillus amyloliquefaciens KHG19]
ATGAAAATTGTGATTGCTGATGATCATCACGTTGTCCGCAAAGGACTGCGCTATTTCTTCGCCACTCAGGAAGACATTGA
AGTTGTCGGTGAGGCGTCCACCGGTGCTGAAGCGCTTCAGCAAGCTGAAAAGACGGAGCCGGACATCATTCTGATGGATT
TATCAATGCCTGATATGGACGGCATAGAAGCGGCAAAAATTGCGGCTGAACGATTTCCGGACATCAGTATCGTCGTTTTG
ACGAGCTATTCTGATCAGGAGCATGTCATTCCCGCCCTTAAAGCCGGCGCAAAAGCGTATCAGCTGAAAGACGCCCAGCC
CGATGATTTAGTAAAAACGCTCCGGGAAGTGTATTCCGGACGTTACCGGCTGTCGGCGGATATTGTGCCTCACGTGCTGA
CCCATATGGTTCAGGGTGATCAGGATAAGGAAAAATATGATCAGCTGACCCCCCGTGAAAAAGATGTTCTTCAAGAAATA
GCCAAAGGGAAAAGCAATAAGGAAATTGCGGCGGCACTGTTTATTTCAGAAAAAACAGTGAAGACCCACGTGTCCAACCT
GCTGTCAAAGCTGAATCTTTCCGATCGGACGCAGGCGGCATTGTATGCGGTAAAATATAATGTTTTTGGAAAGGCGGTAA
AATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-114)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.286

98.131

0.435
  degU Bacillus subtilis subsp. subtilis str. 168

38.356

100

0.393

Multiple sequence alignment