Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ABKQ09_RS12745 Genome accession   NZ_CP166870
Coordinates   2563672..2564439 (-) Length   255 a.a.
NCBI ID   WP_061669975.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain F4     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2558672..2569439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKQ09_RS12725 (ABKQ09_12720) - 2558830..2559642 (-) 813 WP_004429498.1 pyruvate, water dikinase regulatory protein -
  ABKQ09_RS12730 (ABKQ09_12725) ccpN 2559668..2560306 (-) 639 WP_034718267.1 transcriptional regulator CcpN -
  ABKQ09_RS12735 (ABKQ09_12730) glyS 2560454..2562493 (-) 2040 WP_061669976.1 glycine--tRNA ligase subunit beta -
  ABKQ09_RS12740 (ABKQ09_12735) glyQ 2562486..2563373 (-) 888 WP_004429491.1 glycine--tRNA ligase subunit alpha -
  ABKQ09_RS12745 (ABKQ09_12740) recO 2563672..2564439 (-) 768 WP_061669975.1 DNA repair protein RecO Machinery gene
  ABKQ09_RS12750 (ABKQ09_12745) - 2564476..2564619 (-) 144 WP_004429487.1 YqzL family protein -
  ABKQ09_RS12755 (ABKQ09_12750) era 2564776..2565681 (-) 906 WP_371176001.1 GTPase Era -
  ABKQ09_RS12760 (ABKQ09_12755) - 2565662..2566072 (-) 411 WP_010789236.1 cytidine deaminase -
  ABKQ09_RS12765 (ABKQ09_12760) - 2566186..2566563 (-) 378 WP_004429481.1 diacylglycerol kinase family protein -
  ABKQ09_RS12770 (ABKQ09_12765) ybeY 2566544..2567017 (-) 474 WP_004429479.1 rRNA maturation RNase YbeY -
  ABKQ09_RS12775 (ABKQ09_12770) - 2567018..2569153 (-) 2136 WP_219946366.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29129.77 Da        Isoelectric Point: 8.3082

>NTDB_id=1035765 ABKQ09_RS12745 WP_061669975.1 2563672..2564439(-) (recO) [Bacillus atrophaeus strain F4]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKTNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAFIAELVDKGTEEKKPNPYLFELILESLKRLNEGTDPDVITFIVQMKMLGVIGLYPELNHCVHCQSQDG
TFHFSVTDNGFICHRCFGKDPYKVPITPQTARLLRLFYYFDLSRLGNVSIKQETKDELKRVIDLYYEEYSGIYLKSKRFL
DQMESMKNLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1035765 ABKQ09_RS12745 WP_061669975.1 2563672..2564439(-) (recO) [Bacillus atrophaeus strain F4]
ATGCTGACAAAATGTGAAGGAATTGTCCTTCGTACCAATGACTACGGCGAAACAAATAAGATTGTGACCCTGCTGACAAG
GGAGCACGGCAAAATCGGCGTAATGGCAAGAGGCGCCAAAAAAACCAACAGCCGTTTATCAGCCGTCAGCCAGCCTTTTC
TGTATGGATCGTTTTTAATGCAAAAAACGTCAGGTCTCGGGACGCTTCAGCAGGGTGAAATGATTCTCAGTATGAGAGGC
ATCAGAGAAGATTTGTTTTTGACAGCTTATGCTGCTTTTATTGCAGAACTTGTTGATAAGGGGACGGAGGAAAAGAAGCC
GAACCCATATTTGTTTGAATTGATTCTTGAGTCTTTGAAAAGGCTTAATGAAGGAACCGACCCCGATGTCATTACCTTCA
TCGTTCAAATGAAAATGCTGGGTGTAATAGGATTGTATCCTGAACTCAACCACTGTGTGCATTGTCAAAGTCAGGATGGA
ACGTTTCATTTTTCTGTCACGGATAACGGATTTATCTGTCATCGCTGCTTTGGCAAGGACCCTTACAAAGTGCCGATTAC
GCCGCAAACGGCCAGGCTTTTGAGACTGTTTTATTACTTTGATCTTTCTAGACTCGGCAATGTATCCATAAAGCAGGAAA
CAAAAGATGAGCTGAAGCGGGTCATTGACTTGTATTACGAAGAATATTCCGGAATTTATCTTAAATCAAAACGTTTTTTA
GACCAAATGGAGAGTATGAAAAATCTAATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

92.549

100

0.925

Multiple sequence alignment