Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ABKQ09_RS12230 Genome accession   NZ_CP166870
Coordinates   2475491..2477221 (-) Length   576 a.a.
NCBI ID   WP_371175994.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain F4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2470491..2482221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKQ09_RS12210 (ABKQ09_12205) - 2470622..2471740 (+) 1119 WP_371175992.1 NADH-dependent flavin oxidoreductase -
  ABKQ09_RS12215 (ABKQ09_12210) - 2471906..2472763 (+) 858 WP_371175993.1 manganese catalase family protein -
  ABKQ09_RS12220 (ABKQ09_12215) spo0A 2472936..2473733 (-) 798 WP_010789174.1 sporulation transcription factor Spo0A Regulator
  ABKQ09_RS12225 (ABKQ09_12220) spoIVB 2474016..2475296 (-) 1281 WP_003325483.1 SpoIVB peptidase -
  ABKQ09_RS12230 (ABKQ09_12225) recN 2475491..2477221 (-) 1731 WP_371175994.1 DNA repair protein RecN Machinery gene
  ABKQ09_RS12235 (ABKQ09_12230) argR 2477256..2477705 (-) 450 WP_003325480.1 arginine repressor ArgR -
  ABKQ09_RS12240 (ABKQ09_12235) - 2477804..2478649 (-) 846 WP_371175995.1 TlyA family RNA methyltransferase -
  ABKQ09_RS12245 (ABKQ09_12240) dxs 2478646..2480547 (-) 1902 WP_003325478.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ABKQ09_RS12250 (ABKQ09_12245) - 2480755..2481645 (-) 891 WP_010789177.1 polyprenyl synthetase family protein -
  ABKQ09_RS12255 (ABKQ09_12250) - 2481635..2481889 (-) 255 WP_003325476.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64463.21 Da        Isoelectric Point: 4.7139

>NTDB_id=1035756 ABKQ09_RS12230 WP_371175994.1 2475491..2477221(-) (recN) [Bacillus atrophaeus strain F4]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGETKAELEGLFLLESGHPVFEVC
HEQGIDVSDDMIVLRRDINSNGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLQLLDKFAGEEADSALH
AYREGYQRYMKVLKKLRQLSESEQEMAHRLDLIQFQLDEIESAGLELNEDDILQEERLQISNFEKIYEALQNAYNALRSE
QGGLDWVGMASSQLDDISDINEPLQKLSESVSNSYYLLEDSTFQMRNMLDELEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIQNRDSHLQTLKQELDSVGKDVAVEAANVSKIRKAWAKKLAVQIQQELKSLYMEKSTFDTEFLI
RTASRNEEAPIVNGQPVQLTDQGIDMVKFLISTNTGEPLKPLSKVASGGELSRVMLALKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSMGSQVLCITHLPQVAAMADTHLLIAKESKDGRTTTHVTPLSKQEKVAEIGRMIAGVEVTDLTKR
HAKELLKQANQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=1035756 ABKQ09_RS12230 WP_371175994.1 2475491..2477221(-) (recN) [Bacillus atrophaeus strain F4]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAAGAATTGACGGTTTCTTTTGAACGGGGGCTGACTGTATT
AACGGGAGAAACCGGTGCCGGTAAATCCATTATTATTGATGCCATTTCTCTTCTTGTCGGAGGCCGTGGATCGTCTGAAT
TTGTCAGGTACGGCGAAACGAAAGCTGAACTTGAAGGGCTGTTTCTTTTAGAAAGCGGACATCCTGTTTTTGAGGTGTGC
CATGAACAGGGGATTGATGTATCAGATGATATGATTGTGTTGAGGCGTGATATAAATTCCAACGGAAAAAGCGTGTGCCG
CGTCAATGGTAAGCTTGTTACAATTGCAGCGCTAAGGGAAATCGGCAGGCTTTTATTAGATATCCACGGGCAGCACGATA
ATCAGCTGCTGATGGAAGACGATAAGCATCTTCAGCTGTTGGACAAGTTTGCCGGAGAAGAGGCTGACAGCGCGCTCCAT
GCTTATCGGGAAGGCTATCAGCGTTACATGAAGGTACTGAAAAAACTTAGGCAGCTGTCTGAAAGCGAGCAGGAAATGGC
CCATCGGCTGGATTTAATTCAATTCCAGCTGGATGAAATTGAATCAGCGGGTCTGGAACTGAATGAAGACGATATTCTGC
AAGAGGAACGCCTGCAAATTTCAAACTTCGAAAAGATTTATGAGGCGCTGCAAAATGCTTATAACGCGCTTCGAAGTGAG
CAGGGCGGATTGGACTGGGTCGGCATGGCGTCAAGCCAGCTTGACGATATATCCGACATCAATGAACCGCTGCAAAAACT
TTCAGAAAGTGTTTCTAACTCCTATTATCTGCTTGAAGATTCTACATTTCAAATGAGAAACATGCTGGATGAGCTTGAGT
ACGATCCGGAGCGTTTGAATTTTATTGAAACCCGCTTAAATGAGATCAAGCAGCTGAAACGTAAATACGGCGCTACTGTA
GAAGACATTTTGGAATACGCTTCAAAAATTGAAGAAGAGATTGACCAAATCCAAAACAGAGACAGCCACCTTCAAACGCT
TAAGCAGGAGCTGGATTCTGTCGGTAAAGATGTGGCGGTAGAAGCGGCAAACGTCTCAAAAATCAGAAAAGCGTGGGCGA
AAAAGCTGGCTGTTCAAATTCAGCAGGAGCTGAAAAGCCTTTATATGGAGAAGTCGACATTTGATACAGAATTTCTTATC
AGGACGGCATCGCGCAATGAAGAAGCTCCGATTGTAAACGGACAGCCGGTCCAACTGACTGATCAAGGAATAGATATGGT
GAAGTTTCTGATCTCGACCAATACGGGCGAACCGCTAAAACCGCTTTCTAAAGTAGCATCTGGCGGAGAGTTGTCGAGGG
TGATGCTTGCGTTGAAAAGCATCTTTTCCTCACAGCAGGATGTAACGTCAATCATCTTTGACGAAGTCGATACAGGAGTC
AGCGGAAGAGTCGCTCAGGCGATCGCCGAAAAGATTCATAAGGTGTCAATGGGATCACAAGTGCTTTGCATCACCCATCT
GCCTCAGGTCGCCGCTATGGCGGATACCCATCTTTTAATTGCCAAGGAATCAAAAGACGGAAGAACAACAACTCATGTCA
CTCCGCTGTCAAAGCAGGAAAAGGTGGCGGAAATCGGCCGGATGATTGCCGGAGTCGAAGTGACCGATCTGACCAAACGG
CATGCGAAAGAACTTTTAAAACAAGCCAATCAGGTGAAAACGACAGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

90.278

100

0.903

Multiple sequence alignment