Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ABKQ09_RS12220 Genome accession   NZ_CP166870
Coordinates   2472936..2473733 (-) Length   265 a.a.
NCBI ID   WP_010789174.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain F4     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2467936..2478733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKQ09_RS12195 (ABKQ09_12190) - 2468363..2469106 (-) 744 WP_268499246.1 glycerophosphodiester phosphodiesterase -
  ABKQ09_RS12200 (ABKQ09_12195) - 2469218..2469841 (-) 624 WP_003325488.1 N-acetylmuramoyl-L-alanine amidase -
  ABKQ09_RS12205 (ABKQ09_12200) - 2469864..2470166 (-) 303 WP_003325487.1 hypothetical protein -
  ABKQ09_RS12210 (ABKQ09_12205) - 2470622..2471740 (+) 1119 WP_371175992.1 NADH-dependent flavin oxidoreductase -
  ABKQ09_RS12215 (ABKQ09_12210) - 2471906..2472763 (+) 858 WP_371175993.1 manganese catalase family protein -
  ABKQ09_RS12220 (ABKQ09_12215) spo0A 2472936..2473733 (-) 798 WP_010789174.1 sporulation transcription factor Spo0A Regulator
  ABKQ09_RS12225 (ABKQ09_12220) spoIVB 2474016..2475296 (-) 1281 WP_003325483.1 SpoIVB peptidase -
  ABKQ09_RS12230 (ABKQ09_12225) recN 2475491..2477221 (-) 1731 WP_371175994.1 DNA repair protein RecN Machinery gene
  ABKQ09_RS12235 (ABKQ09_12230) argR 2477256..2477705 (-) 450 WP_003325480.1 arginine repressor ArgR -
  ABKQ09_RS12240 (ABKQ09_12235) - 2477804..2478649 (-) 846 WP_371175995.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 29524.93 Da        Isoelectric Point: 6.4134

>NTDB_id=1035755 ABKQ09_RS12220 WP_010789174.1 2472936..2473733(-) (spo0A) [Bacillus atrophaeus strain F4]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLSKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNSSSVTHRAPSSHGSIIRNHEPKRKNLDASITSIIH
EIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSM
TKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 798 bp        

>NTDB_id=1035755 ABKQ09_RS12220 WP_010789174.1 2472936..2473733(-) (spo0A) [Bacillus atrophaeus strain F4]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTCGTAAGCCTGTTGAGTGAATATATAGAGGGTCAGGA
AGATATGGAAGTCATCGGCGTGGCTTATAATGGCCAGGAATGTCTGTCTTTGTTTAAAGAAAAAGATCCTGATGTTCTTG
TCTTAGATATTATAATGCCGCATTTAGACGGACTTGCGGTATTGGAACGGCTCAGGGAGTCAGATCTTTCAAAGCAGCCG
AATGTGATCATGCTGACAGCGTTCGGACAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCTTATTTTATCCT
AAAGCCGTTTGATATGGAAAACCTTGTCGGGCATATCCGCCAAGTCAGCGGAAATTCGAGCAGTGTGACACATCGCGCGC
CTTCATCACATGGCAGCATCATTAGAAATCATGAGCCGAAACGGAAAAATCTCGACGCCAGTATAACAAGCATCATTCAC
GAAATCGGCGTCCCGGCACATATCAAAGGGTATCTCTACCTGCGCGAAGCCATCTCAATGGTCTACAACGATATCGAATT
GCTCGGCAGCATCACGAAAGTACTCTATCCCGATATCGCCAAAAAATTCAACACCACTGCAAGCCGTGTAGAAAGAGCGA
TTCGCCATGCGATTGAAGTGGCATGGAGCAGAGGGAATATCGATTCGATTTCTTCATTGTTTGGGTACACAGTGAGCATG
ACGAAGGCAAAACCTACAAACTCAGAATTCATTGCGATGGTGGCTGATAAGCTGAGACTTGAGCATAAAGCAAGCTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(155-258)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.974

Multiple sequence alignment