Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ABVF47_RS10115 Genome accession   NZ_CP166869
Coordinates   2249409..2250215 (-) Length   268 a.a.
NCBI ID   WP_371688034.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Acer06     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2244409..2255215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVF47_RS10090 (ABVF47_010090) - 2244717..2245748 (+) 1032 WP_367644201.1 SPFH domain-containing protein -
  ABVF47_RS10095 (ABVF47_010095) - 2245757..2247619 (+) 1863 WP_371688033.1 DUF4178 domain-containing protein -
  ABVF47_RS10100 (ABVF47_010100) speD 2247619..2247984 (+) 366 WP_367440093.1 adenosylmethionine decarboxylase -
  ABVF47_RS10105 (ABVF47_010105) - 2248211..2248948 (+) 738 WP_370470319.1 MBL fold metallo-hydrolase -
  ABVF47_RS10110 (ABVF47_010110) - 2249030..2249248 (+) 219 WP_367644207.1 LysR family transcriptional regulator -
  ABVF47_RS10115 (ABVF47_010115) comL 2249409..2250215 (-) 807 WP_371688034.1 outer membrane protein assembly factor BamD Machinery gene
  ABVF47_RS10120 (ABVF47_010120) rluD 2250214..2251338 (+) 1125 WP_367420119.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABVF47_RS10125 (ABVF47_010125) pgeF 2251351..2252145 (+) 795 WP_370470317.1 peptidoglycan editing factor PgeF -
  ABVF47_RS10130 (ABVF47_010130) - 2252232..2253068 (-) 837 WP_370470316.1 hypothetical protein -
  ABVF47_RS10135 (ABVF47_010135) - 2253307..2253759 (-) 453 WP_371688035.1 hypothetical protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31049.84 Da        Isoelectric Point: 5.9590

>NTDB_id=1035715 ABVF47_RS10115 WP_371688034.1 2249409..2250215(-) (comL) [Snodgrassella alvi strain Acer06]
MKNLFLAVALGLLLSACASTSTVDKDSQITQDWSVQRLYNEAHDELMHHNYTHAEKLYEILQSRFPYGSYAEQAQLDTAY
AYYKDDENDKALAAIEQFQRLYPQHPNMDYALYLKALIQLNEDKSFVNKLAKQDWSDRDPKANREAYTTFAQLVEYFPQS
KYAADARDKMQKLLDALGGNELSVARYYMKRGAWLAAVGRAQTVISQYQNTPNVEEALAIMVSAYEKLGEQKLSDDTKRV
LAQNFPNSPYLQSPWQDHNAIPWWRYWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=1035715 ABVF47_RS10115 WP_371688034.1 2249409..2250215(-) (comL) [Snodgrassella alvi strain Acer06]
ATGAAAAATTTGTTTTTGGCGGTGGCCTTAGGCCTTTTACTGAGTGCCTGTGCCAGCACAAGTACGGTCGATAAGGATTC
CCAGATTACTCAGGACTGGTCTGTTCAGCGTCTGTATAATGAAGCACACGATGAGCTGATGCATCATAATTATACTCATG
CAGAGAAATTATACGAAATTCTGCAGTCTCGTTTCCCGTATGGTTCGTATGCGGAGCAGGCTCAGCTTGACACAGCATAT
GCTTATTATAAAGATGATGAGAATGATAAAGCGCTGGCGGCAATTGAACAGTTTCAGCGTTTGTATCCGCAACACCCCAA
TATGGATTACGCTTTGTATTTGAAAGCACTGATTCAGCTGAATGAGGATAAATCCTTTGTTAATAAGCTGGCCAAACAAG
ATTGGTCTGACCGCGACCCGAAAGCTAATCGGGAAGCTTATACCACTTTTGCACAACTAGTAGAATATTTCCCTCAAAGT
AAATATGCTGCCGATGCTCGCGATAAGATGCAGAAACTACTGGATGCGCTTGGCGGGAATGAGCTTTCAGTAGCACGTTA
TTATATGAAACGCGGTGCATGGCTGGCGGCTGTTGGCCGTGCACAGACGGTTATTTCTCAATACCAGAATACGCCTAATG
TGGAGGAAGCGCTGGCTATTATGGTTTCTGCGTATGAAAAACTGGGTGAGCAGAAGCTCAGTGATGATACCAAGCGCGTT
CTGGCACAGAATTTTCCAAATAGCCCGTATCTGCAATCTCCGTGGCAGGATCACAATGCCATTCCATGGTGGCGTTATTG
GAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

68.165

99.627

0.679
  comL Neisseria gonorrhoeae MS11

67.79

99.627

0.675

Multiple sequence alignment