Detailed information NTG1035704

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ABVF47_RS05595
• Genome accession: NZ_CP166869
• Coordinates: 1222661..1224133 (-)
• Length: 490 a.a.
• NCBI ID: WP_371687717.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Acer06
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1217661..1229133

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABVF47_RS05575 (ABVF47_005575)	amgK	1219788..1220792 (+)	1005	WP_371687715.1	N-acetylmuramate/N-acetylglucosamine kinase AmgK	-
ABVF47_RS05580 (ABVF47_005580)	-	1221269..1221541 (-)	273	WP_371687716.1	hypothetical protein	-
ABVF47_RS05585 (ABVF47_005585)	-	1221529..1221828 (-)	300	WP_367645052.1	hypothetical protein	-
ABVF47_RS05590 (ABVF47_005590)	-	1221900..1222661 (-)	762	WP_367645053.1	class I SAM-dependent methyltransferase	-
ABVF47_RS05595 (ABVF47_005595)	pilR	1222661..1224133 (-)	1473	WP_371687717.1	sigma-54-dependent transcriptional regulator	Regulator
ABVF47_RS05600 (ABVF47_005600)	-	1224126..1225700 (-)	1575	WP_371687718.1	ATP-binding protein	-
ABVF47_RS05605 (ABVF47_005605)	parC	1225707..1228025 (-)	2319	WP_371687719.1	DNA topoisomerase IV subunit A	-

Sequence

Protein

• Length: 490 a.a.
• Molecular weight: 54620.25 Da
• Isoelectric Point: 6.0374

>NTDB_id=1035704 ABVF47_RS05595 WP_371687717.1 1222661..1224133(-) (pilR) [Snodgrassella alvi strain Acer06]
MNSQVELKKPVLVIDDEADIRDLMELTLIKMGLSVQTAAGVAEAKKALRNHAFSLVLTDMRMPDGSGLEIVDYITEHNLD
IPIAVITAYGNAVQAVQALKNGAFDYLQKPITLAQLRTLVKSVLTINHSSDTDTITKAATTTKQTEVKSQNVSEPGTRTQ
SATQERLLGHSPLIAEVRQLISKLAKSNVPVYIAGESGSGKEQAARSIHEQSARKDKAFVAVNCGAIPEALMESEFFGYK
KGSFTGADSDRAGFFQHADGGTLFLDEVADLPLSMQVKLLRAIQERAVRRIGEMEEKQVDVRLICATHKDLNALVESGQF
RQDLFYRLNVVSITMPPLRELRDDLPELIQVLLQRILRDETMTLSPVAEQALLQYSYPGNFRELENILERAIALSKNHII
EVDDLQIQSLSFDNQRNLSVDSVRNSAGENPARTDFQFGHTQIQDYLDDVERHILQQALAQTRYNRTQAAKLLGISFRSM
RYRMERLGIA

Nucleotide

• Length: 1473 bp

>NTDB_id=1035704 ABVF47_RS05595 WP_371687717.1 1222661..1224133(-) (pilR) [Snodgrassella alvi strain Acer06]
ATGAATAGTCAGGTAGAATTAAAAAAGCCAGTGCTGGTAATAGATGATGAAGCTGATATTCGTGATTTAATGGAATTAAC
CCTGATAAAAATGGGTTTATCTGTCCAGACCGCTGCCGGAGTGGCTGAAGCCAAAAAAGCATTACGTAATCATGCTTTCT
CTCTGGTACTTACTGATATGCGCATGCCAGATGGATCTGGTCTGGAAATTGTAGATTATATAACCGAACACAATCTGGAT
ATTCCGATTGCTGTGATTACTGCTTACGGTAACGCAGTGCAAGCAGTGCAGGCACTAAAAAATGGTGCTTTTGATTATCT
GCAAAAACCCATTACTCTGGCACAACTACGCACATTAGTTAAATCTGTGCTGACAATCAACCATAGCTCTGATACCGACA
CCATCACTAAAGCAGCTACAACCACTAAACAAACTGAAGTGAAATCCCAGAATGTTTCTGAGCCCGGTACAAGGACCCAA
AGTGCTACTCAAGAGCGACTGCTTGGTCACTCTCCTTTAATTGCTGAAGTGCGACAATTAATAAGCAAACTGGCTAAATC
CAATGTACCCGTCTATATTGCCGGAGAATCCGGTAGTGGAAAAGAGCAAGCAGCACGCAGTATTCATGAACAATCAGCAC
GTAAAGATAAAGCATTTGTTGCAGTCAATTGCGGGGCGATTCCTGAAGCATTGATGGAAAGTGAGTTTTTTGGTTATAAA
AAAGGGAGTTTTACCGGCGCAGACAGTGACAGAGCAGGATTTTTTCAGCATGCAGACGGTGGAACATTATTTTTGGATGA
AGTGGCTGATTTGCCATTATCCATGCAGGTAAAGCTTTTGCGTGCCATTCAGGAACGAGCTGTTCGCCGGATTGGTGAAA
TGGAAGAAAAGCAGGTTGATGTCCGTCTTATCTGTGCTACTCATAAAGACCTGAATGCTTTGGTAGAATCGGGACAATTT
CGGCAGGATTTGTTTTACCGTCTAAATGTGGTTTCTATAACCATGCCCCCCTTACGTGAATTACGTGATGATTTACCAGA
ACTGATTCAGGTTTTGTTGCAACGTATTCTACGTGATGAAACCATGACCCTGAGCCCAGTAGCTGAGCAAGCTTTATTGC
AATATAGCTATCCCGGCAATTTCCGCGAGCTGGAAAATATATTAGAACGAGCTATTGCTTTATCAAAAAATCATATTATC
GAAGTTGATGATTTACAGATTCAAAGTCTCTCATTTGATAATCAGCGTAATTTATCAGTAGATAGTGTCCGTAATTCTGC
CGGGGAAAATCCCGCAAGGACAGATTTTCAGTTTGGTCACACCCAGATTCAGGACTATCTCGACGATGTAGAACGTCATA
TTCTGCAGCAGGCGCTGGCACAAACCCGTTATAACCGTACACAAGCGGCAAAACTATTGGGAATCAGCTTTAGATCAATG
CGTTATCGGATGGAACGATTGGGTATTGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (447-486)

• Sigma-54 interaction domain (Sigma54_activat) (168-333)

• Response regulator receiver domain (Response_reg) (11-120)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	48.56	99.184	0.482
pilR	Acinetobacter baumannii strain A118	42.062	98.98	0.416