Detailed information NTG1035616

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: AB1S55_RS09450
• Genome accession: NZ_CP166840
• Coordinates: 2144408..2145802 (-)
• Length: 464 a.a.
• NCBI ID: WP_370977749.1
• Uniprot ID: -
• Organism: Agaribacterium sp. ZY112
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2139408..2150802

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB1S55_RS09435 (AB1S55_09430)	-	2139707..2143306 (+)	3600	WP_370981560.1	pilus assembly protein	-
AB1S55_RS09440 (AB1S55_09435)	-	2143317..2143745 (+)	429	WP_370977747.1	type IV pilin protein	-
AB1S55_RS09445 (AB1S55_09440)	-	2143756..2144283 (-)	528	WP_370977748.1	GspH/FimT family protein	-
AB1S55_RS09450 (AB1S55_09445)	pilR	2144408..2145802 (-)	1395	WP_370977749.1	sigma-54-dependent transcriptional regulator	Regulator
AB1S55_RS09455 (AB1S55_09450)	-	2145806..2147404 (-)	1599	WP_370977751.1	PAS domain-containing sensor histidine kinase	-
AB1S55_RS09460 (AB1S55_09455)	-	2147479..2149110 (+)	1632	WP_370977752.1	NAD+ synthase	-
AB1S55_RS09465 (AB1S55_09460)	-	2149207..2150154 (-)	948	WP_370977753.1	outer membrane protein assembly factor BamD	-

Sequence

Protein

• Length: 464 a.a.
• Molecular weight: 51429.54 Da
• Isoelectric Point: 5.0821

>NTDB_id=1035616 AB1S55_RS09450 WP_370977749.1 2144408..2145802(-) (pilR) [Agaribacterium sp. ZY112]
MTTLHALIIDDEPDIRELLSLTLMRMGLDCDTAKDFNEAISYLKSGKTYNICLTDMRLPDGSGLDIVRFVQEKLSTLPIA
VITAHGNMDTAVEAMKAGAFDFLNKPVDLKDLRTLVDSAVSSSQLEEKNCSELDAQVDIIGNSPAVTKLKQTISKLARSQ
APVYISGESGSGKELVARAIHKLGPRADKPFIPVNCGAIPSELVESEFFGYKKGAFTGAHRDSEGLFQAANGGTLFLDEV
ADLPLSMQVKILRAIQEKAVRPVGTQSEVSVNVRILSATHKGLHTLVEKGEFRQDLFYRLNVIQLDVPPLRKRLDDLGAL
IQHILQRLDSDLGDSYTRINPEALAKLKTYSFPGNVRELENILERAFTLCENSSIGVEDLQLQHQSPEESVNNLQNTANN
NLLKTVLEYGSIDAYLEEIEKEILHEALEKDRWNKTNAAKTLGISFRSFRYRLKKLGLDNSDDD

Nucleotide

• Length: 1395 bp

>NTDB_id=1035616 AB1S55_RS09450 WP_370977749.1 2144408..2145802(-) (pilR) [Agaribacterium sp. ZY112]
ATGACAACTTTACACGCCCTGATTATTGACGACGAACCTGATATTCGAGAACTGTTAAGCCTAACCTTAATGCGAATGGG
CTTAGACTGCGATACTGCAAAAGACTTTAATGAAGCCATTAGCTACCTAAAATCGGGTAAAACCTACAATATCTGCTTAA
CCGATATGCGCTTACCCGATGGTAGCGGGCTTGATATCGTACGTTTTGTGCAAGAAAAATTGTCTACCCTACCCATCGCA
GTGATTACCGCTCACGGCAATATGGACACAGCCGTTGAAGCCATGAAAGCCGGTGCCTTTGATTTTCTAAACAAGCCTGT
CGATTTAAAAGACCTACGCACACTCGTCGATTCAGCAGTAAGCTCTAGTCAATTAGAAGAGAAAAACTGTAGTGAGCTAG
ATGCACAAGTAGACATCATAGGTAACTCCCCCGCTGTCACCAAGCTCAAACAAACAATCAGCAAATTAGCCCGATCTCAA
GCCCCTGTTTATATCAGCGGAGAATCTGGAAGCGGTAAAGAGCTGGTAGCCCGGGCCATTCATAAACTTGGGCCCAGAGC
AGACAAACCCTTTATCCCAGTGAACTGCGGAGCTATCCCTTCGGAATTGGTAGAAAGTGAGTTTTTTGGCTATAAAAAAG
GTGCTTTTACTGGGGCTCACCGAGACAGCGAAGGTTTGTTTCAAGCCGCTAACGGTGGCACTTTATTTTTAGATGAAGTC
GCCGACCTGCCCTTATCTATGCAAGTAAAAATACTTCGCGCCATCCAAGAAAAAGCCGTTCGCCCTGTGGGAACACAAAG
TGAAGTGTCCGTTAACGTTCGAATTTTAAGCGCCACACACAAAGGCTTGCACACGCTCGTTGAAAAGGGTGAATTTCGCC
AAGATTTATTCTATCGCCTAAATGTCATACAGCTTGATGTACCTCCTTTACGTAAGCGTTTGGACGACCTTGGAGCCTTA
ATTCAACACATATTACAAAGGCTCGACAGCGACTTAGGTGACTCTTATACACGCATAAACCCTGAGGCTTTAGCCAAATT
AAAAACCTACAGCTTCCCAGGCAATGTCAGAGAACTAGAAAATATCCTAGAGCGCGCATTCACTTTGTGTGAAAACAGCT
CTATTGGAGTCGAAGATCTACAACTGCAGCATCAAAGCCCAGAAGAAAGCGTAAACAACCTACAAAACACGGCTAATAAT
AATTTACTTAAAACCGTCTTAGAGTATGGCTCTATTGATGCGTACCTAGAGGAAATAGAGAAAGAAATATTACACGAAGC
CTTAGAAAAAGACCGCTGGAATAAAACCAATGCGGCTAAAACCCTAGGCATTAGTTTCCGCAGTTTTCGTTATCGCTTAA
AGAAACTAGGCTTAGACAACAGCGACGATGACTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (139-305)

• Bacterial regulatory protein, Fis family (HTH_8) (416-456)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	58.134	99.353	0.578
pilR	Acinetobacter baumannii strain A118	46.567	100	0.468