Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AB3239_RS18680 Genome accession   NZ_CP166831
Coordinates   3584666..3585355 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain TE3T-UV25     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3579666..3590355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3239_RS18645 (AB3239_18645) flgN 3579846..3580328 (-) 483 WP_014481048.1 flagellar protein FlgN -
  AB3239_RS18650 (AB3239_18650) flgM 3580344..3580610 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB3239_RS18655 (AB3239_18655) yvyF 3580691..3581110 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  AB3239_RS18660 (AB3239_18660) comFC 3581184..3581906 (-) 723 WP_370957021.1 comF operon protein ComFC Machinery gene
  AB3239_RS18665 (AB3239_18665) comFB 3581870..3582166 (-) 297 WP_003227989.1 late competence protein ComFB -
  AB3239_RS18670 (AB3239_18670) comFA 3582226..3583617 (-) 1392 WP_120027550.1 ATP-dependent helicase ComFA Machinery gene
  AB3239_RS18675 (AB3239_18675) fakBA 3583723..3584568 (-) 846 WP_038829896.1 DegV family protein -
  AB3239_RS18680 (AB3239_18680) degU 3584666..3585355 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AB3239_RS18685 (AB3239_18685) degS 3585438..3586595 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  AB3239_RS18690 (AB3239_18690) yvyE 3586812..3587465 (+) 654 WP_003227979.1 YigZ family protein -
  AB3239_RS18695 (AB3239_18695) tagV 3587465..3588640 (+) 1176 WP_103803401.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  AB3239_RS18700 (AB3239_18700) tagO 3588713..3589789 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1035561 AB3239_RS18680 WP_003219701.1 3584666..3585355(-) (degU) [Bacillus subtilis strain TE3T-UV25]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1035561 AB3239_RS18680 WP_003219701.1 3584666..3585355(-) (degU) [Bacillus subtilis strain TE3T-UV25]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment