Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AB3239_RS18670 Genome accession   NZ_CP166831
Coordinates   3582226..3583617 (-) Length   463 a.a.
NCBI ID   WP_120027550.1    Uniprot ID   -
Organism   Bacillus subtilis strain TE3T-UV25     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3577226..3588617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3239_RS18635 (AB3239_18635) flgL 3577397..3578293 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  AB3239_RS18640 (AB3239_18640) flgK 3578304..3579827 (-) 1524 WP_120027547.1 flagellar hook-associated protein FlgK -
  AB3239_RS18645 (AB3239_18645) flgN 3579846..3580328 (-) 483 WP_014481048.1 flagellar protein FlgN -
  AB3239_RS18650 (AB3239_18650) flgM 3580344..3580610 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB3239_RS18655 (AB3239_18655) yvyF 3580691..3581110 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  AB3239_RS18660 (AB3239_18660) comFC 3581184..3581906 (-) 723 WP_370957021.1 comF operon protein ComFC Machinery gene
  AB3239_RS18665 (AB3239_18665) comFB 3581870..3582166 (-) 297 WP_003227989.1 late competence protein ComFB -
  AB3239_RS18670 (AB3239_18670) comFA 3582226..3583617 (-) 1392 WP_120027550.1 ATP-dependent helicase ComFA Machinery gene
  AB3239_RS18675 (AB3239_18675) fakBA 3583723..3584568 (-) 846 WP_038829896.1 DegV family protein -
  AB3239_RS18680 (AB3239_18680) degU 3584666..3585355 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AB3239_RS18685 (AB3239_18685) degS 3585438..3586595 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  AB3239_RS18690 (AB3239_18690) yvyE 3586812..3587465 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52515.48 Da        Isoelectric Point: 9.7915

>NTDB_id=1035560 AB3239_RS18670 WP_120027550.1 3582226..3583617(-) (comFA) [Bacillus subtilis strain TE3T-UV25]
MNVPVEKNSSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYYSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWQSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=1035560 AB3239_RS18670 WP_120027550.1 3582226..3583617(-) (comFA) [Bacillus subtilis strain TE3T-UV25]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTATTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGGGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCCGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.272

100

0.983

Multiple sequence alignment