Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   AB3239_RS13340 Genome accession   NZ_CP166831
Coordinates   2560115..2561185 (-) Length   356 a.a.
NCBI ID   WP_032726161.1    Uniprot ID   -
Organism   Bacillus subtilis strain TE3T-UV25     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2555115..2566185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3239_RS13295 (AB3239_13295) tapA 2555594..2556355 (-) 762 WP_032726156.1 amyloid fiber anchoring/assembly protein TapA -
  AB3239_RS13300 (AB3239_13300) yqzG 2556626..2556952 (+) 327 WP_038829733.1 YqzG/YhdC family protein -
  AB3239_RS13305 (AB3239_13305) spoIITA 2556994..2557173 (-) 180 WP_014480252.1 YqzE family protein -
  AB3239_RS13310 (AB3239_13310) comGG 2557245..2557619 (-) 375 WP_032726157.1 ComG operon protein ComGG Machinery gene
  AB3239_RS13315 (AB3239_13315) comGF 2557620..2558003 (-) 384 WP_032726158.1 ComG operon protein ComGF Machinery gene
  AB3239_RS13320 (AB3239_13320) comGE 2558029..2558376 (-) 348 WP_021480020.1 ComG operon protein 5 Machinery gene
  AB3239_RS13325 (AB3239_13325) comGD 2558360..2558791 (-) 432 WP_038829732.1 comG operon protein ComGD Machinery gene
  AB3239_RS13330 (AB3239_13330) comGC 2558781..2559077 (-) 297 WP_024573391.1 comG operon protein ComGC Machinery gene
  AB3239_RS13335 (AB3239_13335) comGB 2559091..2560128 (-) 1038 WP_038829731.1 comG operon protein ComGB Machinery gene
  AB3239_RS13340 (AB3239_13340) comGA 2560115..2561185 (-) 1071 WP_032726161.1 competence protein ComGA Machinery gene
  AB3239_RS13345 (AB3239_13345) - 2561397..2561594 (-) 198 WP_032726162.1 hypothetical protein -
  AB3239_RS13350 (AB3239_13350) corA 2561596..2562549 (-) 954 WP_015483432.1 magnesium transporter CorA -
  AB3239_RS13355 (AB3239_13355) yqhB 2562692..2564020 (+) 1329 WP_021480026.1 hemolysin family protein -
  AB3239_RS13360 (AB3239_13360) rsbRD 2564073..2564909 (-) 837 WP_021480027.1 RsbT co-antagonist protein RsbRD -
  AB3239_RS13370 (AB3239_13370) mgsR 2565133..2565513 (-) 381 WP_003230147.1 transcriptional regulator MgsR -
  AB3239_RS13375 (AB3239_13375) yqgY 2565745..2565990 (+) 246 WP_003226300.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40431.62 Da        Isoelectric Point: 9.0175

>NTDB_id=1035538 AB3239_RS13340 WP_032726161.1 2560115..2561185(-) (comGA) [Bacillus subtilis strain TE3T-UV25]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQSGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1035538 AB3239_RS13340 WP_032726161.1 2560115..2561185(-) (comGA) [Bacillus subtilis strain TE3T-UV25]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAGGCATATCTAACAAAGGCTTCTGATATTCACATCGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGACTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAGCGGTTCGCTTACG
TTAAAGCTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCGTTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCGACTGGTTCAGGGAAGACTACCACATTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTCCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAAGCAATTTTGCGCCATGATCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATTTGGTACTAACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCCATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATCGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGCCGACAGTCAC
GAAATACCAGGAGAGCTAGTGTTTATGAGCTTCTATACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

99.719

100

0.997

Multiple sequence alignment