Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AB3239_RS01945 Genome accession   NZ_CP166831
Coordinates   362317..362766 (-) Length   149 a.a.
NCBI ID   WP_302897101.1    Uniprot ID   -
Organism   Bacillus subtilis strain TE3T-UV25     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 357317..367766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3239_RS01905 (AB3239_01905) - 357639..357836 (+) 198 WP_122060560.1 hypothetical protein -
  AB3239_RS01910 (AB3239_01910) yckC 357856..358311 (+) 456 WP_076458396.1 RDD family protein -
  AB3239_RS01915 (AB3239_01915) yckD 358392..358724 (+) 333 WP_032724908.1 YckD family protein -
  AB3239_RS01920 (AB3239_01920) - 358851..359273 (+) 423 WP_170939093.1 MarR family winged helix-turn-helix transcriptional regulator -
  AB3239_RS01925 (AB3239_01925) - 359261..359602 (+) 342 WP_032724911.1 DUF3147 family protein -
  AB3239_RS01930 (AB3239_01930) - 359621..360349 (+) 729 WP_370957162.1 AAA family ATPase -
  AB3239_RS01935 (AB3239_01935) bglC 360422..361855 (+) 1434 WP_370957163.1 6-phospho-beta-glucosidase -
  AB3239_RS01940 (AB3239_01940) nin/comJ 361892..362290 (-) 399 WP_302897100.1 DNA-entry nuclease inhibitor Regulator
  AB3239_RS01945 (AB3239_01945) nucA/comI 362317..362766 (-) 450 WP_302897101.1 DNA-entry nuclease Machinery gene
  AB3239_RS01950 (AB3239_01950) tlpC 362934..364655 (-) 1722 WP_370957164.1 methyl-accepting chemotaxis protein TlpC -
  AB3239_RS01955 (AB3239_01955) hxlB 364765..365322 (-) 558 WP_041850679.1 6-phospho-3-hexuloisomerase -
  AB3239_RS01960 (AB3239_01960) hxlA 365328..365960 (-) 633 WP_032724921.1 3-hexulose-6-phosphate synthase -
  AB3239_RS01965 (AB3239_01965) hxlR 366193..366555 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16468.45 Da        Isoelectric Point: 4.5282

>NTDB_id=1035498 AB3239_RS01945 WP_302897101.1 362317..362766(-) (nucA/comI) [Bacillus subtilis strain TE3T-UV25]
MNITTDIIKTILLVIVIIAAVAVGLIKGDFFSADQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=1035498 AB3239_RS01945 WP_302897101.1 362317..362766(-) (nucA/comI) [Bacillus subtilis strain TE3T-UV25]
GTGAACATAACGACGGACATCATAAAAACAATACTTCTCGTCATCGTCATCATAGCAGCTGTAGCTGTCGGTCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.987

100

0.98

Multiple sequence alignment