Detailed information NTG1035452

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OAM_RS13745
• Genome accession: NZ_CP166824
• Coordinates: 3099821..3100801 (-)
• Length: 326 a.a.
• NCBI ID: WP_010435803.1
• Uniprot ID: A0AAN0N9Q1
• Organism: Vibrio cyclitrophicus ZF14
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3094821..3105801

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OAM_RS13730 (OAM_013730)	recA	3095352..3096392 (-)	1041	WP_010435812.1	recombinase RecA	Machinery gene
OAM_RS13735 (OAM_013735)	pncC	3096532..3097026 (-)	495	WP_010435808.1	nicotinamide-nucleotide amidase	-
OAM_RS13740 (OAM_013740)	mutS	3097150..3099711 (+)	2562	WP_010435805.1	DNA mismatch repair protein MutS	-
OAM_RS13745 (OAM_013745)	rpoS	3099821..3100801 (-)	981	WP_010435803.1	RNA polymerase sigma factor RpoS	Regulator
OAM_RS13750 (OAM_013750)	nlpD	3100900..3101814 (-)	915	WP_010435800.1	murein hydrolase activator NlpD	-
OAM_RS13755 (OAM_013755)	-	3101850..3102476 (-)	627	WP_010435798.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
OAM_RS13760 (OAM_013760)	surE	3102477..3103220 (-)	744	WP_010435796.1	5'/3'-nucleotidase SurE	-
OAM_RS13765 (OAM_013765)	truD	3103296..3104342 (-)	1047	WP_010435794.1	tRNA pseudouridine(13) synthase TruD	-
OAM_RS13770 (OAM_013770)	ispF	3104365..3104844 (-)	480	WP_010435793.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OAM_RS13775 (OAM_013775)	ispD	3104847..3105548 (-)	702	WP_010435790.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37267.52 Da
• Isoelectric Point: 5.2707

>NTDB_id=1035452 OAM_RS13745 WP_010435803.1 3099821..3100801(-) (rpoS) [Vibrio cyclitrophicus ZF14]
MSISNAVTKEEFDLNQVTTESETLGKAKRTVTKKTEAKEEAEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIATKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREICLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=1035452 OAM_RS13745 WP_010435803.1 3099821..3100801(-) (rpoS) [Vibrio cyclitrophicus ZF14]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTAACCAAGTAACCACGGAATCGGAAACACTTGGAAAAGC
AAAGCGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAAGCTGAAGTTACGTCTAAAAGTTTAGATGCTACTCAACTCT
ACTTAGGCGAAATTGGTTTCTCACCACTACTAACCGCTGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCGGCCCGCAAACGCATGATTGAAAGTAACCTGCGTTTGGTGGTTAAAATATCTCGTCGTTATAGCAACCGTGGTTT
GGCACTTCTCGATCTAATTGAAGAAGGCAACCTAGGCTTGATTCGCGCCGTAGAGAAGTTTGACCCAGAGCGAGGTTTCC
GCTTTTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCTTTAATGAATCAGACTCGCACCATCCGTTTG
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTACGTACAGCAAGAGAGTTATCACAAAAGCTTGACCATGAACCAAC
GGCTGAAGAAATTGCTACTAAGCTAGACAAGCCAGTTGGTGATGTGAGCAAGATGCTTCGTTTAAACGAGCGAGTGAGCT
CCGTTGATACGCCAATTGGTGGTGACGGTGAGAAAGCACTGTTGGATATTATTCCGGACATCAACAATTCCGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCGTTGATTTTCTGGCTAGATGAGCTGAACCCGAAACAGAAAGAGGTGCT
TGCACGTCGCTTTGGACTACTTGGCTATGAACCGTCAACGTTAGAAGAAGTAGGCCGTGAAATCTGCCTGACTCGTGAAC
GTGTTCGTCAAATCCAAGTTGAAGGTCTTCGCCGTCTACGAGAGATTCTGATCAAGCAAGGTCTGAACATGGAAAACCTG
TTTAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.437	100	0.834