Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   QUF19_RS14195 Genome accession   NZ_AP028067
Coordinates   3211479..3212084 (+) Length   201 a.a.
NCBI ID   WP_048664508.1    Uniprot ID   A0A2N7JXS8
Organism   Vibrio sp. FE10     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 3206479..3217084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUF19_RS14175 - 3206717..3207634 (-) 918 WP_286298899.1 ABC transporter ATP-binding protein -
  QUF19_RS14180 - 3207942..3209573 (-) 1632 WP_286298900.1 SulP family inorganic anion transporter -
  QUF19_RS14185 can 3209860..3210519 (+) 660 WP_286294721.1 carbonate dehydratase -
  QUF19_RS14190 hpt 3210611..3211141 (-) 531 WP_010435974.1 hypoxanthine phosphoribosyltransferase -
  QUF19_RS14195 opaR 3211479..3212084 (+) 606 WP_048664508.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  QUF19_RS14200 lpdA 3212285..3213712 (-) 1428 WP_004735450.1 dihydrolipoyl dehydrogenase -
  QUF19_RS14205 aceF 3213955..3215853 (-) 1899 WP_286294722.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23209.44 Da        Isoelectric Point: 6.0748

>NTDB_id=103520 QUF19_RS14195 WP_048664508.1 3211479..3212084(+) (opaR) [Vibrio sp. FE10]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKENLHNIATEMVTLVAQDSHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFSKAIERGEVCDDHDPK
HLANLFHGICYSLFIQAKRVETPEELSSLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=103520 QUF19_RS14195 WP_048664508.1 3211479..3212084(+) (opaR) [Vibrio sp. FE10]
ATGGACTCAATCTCTAAGAGACCTAGAACTAGGCTTTCACCCCTAAAAAGAAAACTGCAATTGATGGAGATCGCTCTTGA
AGTCTTCTCTCGTCGTGGCATTGGCCGTGGCGGTCATGCAGACATCGCAGACATTGCTCAAGTATCAGTTGCAACGGTAT
TTAACTACTTCCCAACCCGTGAAGACTTGGTTGATGAAGTGCTTAATCACGTGGTTCGCCAATTCTCTAACTTCCTTTCA
GACAATATCGACTTAGATATTCACGCAAAAGAAAACCTACATAATATTGCGACTGAAATGGTGACGTTAGTGGCTCAAGA
TAGCCATTGGTTGAACGTATGGTTTGAATGGAGCGCTTCGACTCGTGATGAAGTGTGGCCTCTATTCGTAACCACTAACC
GCACTAACCAGATGTTAGTACAAAATATGTTTAGCAAAGCGATTGAGCGCGGCGAAGTTTGCGACGATCACGACCCTAAG
CATCTAGCAAACCTATTCCACGGCATCTGCTACTCGCTGTTCATTCAAGCGAAACGTGTGGAAACGCCAGAAGAGCTTTC
AAGCTTAACAGATAGCTACCTAAACATGCTGTGCATCTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7JXS8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

83

99.502

0.826
  hapR Vibrio cholerae C6706

73.367

99.005

0.726
  hapR Vibrio cholerae strain A1552

73.367

99.005

0.726

Multiple sequence alignment