Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   QUF19_RS11620 Genome accession   NZ_AP028067
Coordinates   2621392..2622780 (-) Length   462 a.a.
NCBI ID   WP_017111109.1    Uniprot ID   -
Organism   Vibrio sp. FE10     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2616392..2627780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUF19_RS11585 moaE 2616852..2617325 (-) 474 WP_286293685.1 molybdopterin synthase catalytic subunit MoaE -
  QUF19_RS11590 moaD 2617328..2617573 (-) 246 WP_017111106.1 molybdopterin synthase sulfur carrier subunit -
  QUF19_RS11595 moaC 2617570..2618049 (-) 480 WP_004734026.1 cyclic pyranopterin monophosphate synthase MoaC -
  QUF19_RS11600 moaB 2618062..2618574 (-) 513 WP_004734027.1 molybdenum cofactor biosynthesis protein B -
  QUF19_RS11605 moaA 2618666..2619655 (-) 990 WP_017632500.1 GTP 3',8-cyclase MoaA -
  QUF19_RS11610 - 2619991..2620878 (+) 888 WP_286293763.1 YvcK family protein -
  QUF19_RS11615 luxU 2621024..2621368 (-) 345 WP_065103213.1 quorum-sensing phosphorelay protein LuxU -
  QUF19_RS11620 luxO 2621392..2622780 (-) 1389 WP_017111109.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  QUF19_RS11625 uvrB 2623053..2625083 (-) 2031 WP_017111110.1 excinuclease ABC subunit UvrB -
  QUF19_RS11635 rsxA 2626171..2626749 (+) 579 WP_004734039.1 electron transport complex subunit RsxA -
  QUF19_RS11640 rsxB 2626752..2627345 (+) 594 WP_004734040.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51746.31 Da        Isoelectric Point: 6.4047

>NTDB_id=103518 QUF19_RS11620 WP_017111109.1 2621392..2622780(-) (luxO) [Vibrio sp. FE10]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSAEHPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAQEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIENSL
RLKEKQNEDITVKDIFPLWITEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQTWNAKQ

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=103518 QUF19_RS11620 WP_017111109.1 2621392..2622780(-) (luxO) [Vibrio sp. FE10]
ATGCAATCAAAAACGCTAGATAACAAATCGAAGTATTTGTTGATGGTAGAGGATACCGCTTCAGTAGCGGCTCTATATCG
CTCGTATCTTACACCGCTCGAGATTGATATCAACATTGTCGGCACAGGCCGCGATGCAATTGAGAGTTTGAATCACCGAA
TCCCAGACCTTATTTTATTAGATCTACGTCTACCTGATATGACGGGTATGGACGTGCTATTTGCTGTAAAACAAAAATAC
CCAGAAGTTCCTGTCATCTTTATGACGGCTCACGGCTCGATTGATACGGCCGTTGAAGCGATGCGTCATGGTTCTCAAGA
TTTTCTTATCAAACCGTGTGAAGCCGACCGACTTCGTATTACGGTGAACAACGCGATCCGCAAAGCGACAAAACTCAAAA
ACAGCGCTGAACATCCCGGTAATCAAAACTATCAAGGCTTCATTGGTAGCAGCCAGACCATGCAACAGGTCTACCGAACG
ATTGATTCTGCAGCATCAAGTAAGGCGAGTATCTTCATCACGGGTGAAAGTGGTACCGGTAAAGAGGTGTGTGCAGAAGC
GATTCACGCTGCGAGTAAGCGTGGTGATAAGCCTTTCATCGCGATTAACTGTGCCGCTATTCCTAAAGATTTGATTGAAA
GTGAACTGTTTGGTCACGTTAAGGGTGCCTTTACCGGTGCCGCAACGGATCGTCAAGGCGCTGCTGAACTCGCAGATGGT
GGAACCCTGTTCCTCGATGAGTTGTGCGAAATGGATCTTGAGTTGCAAACCAAGCTTCTGCGTTTCATTCAAACTGGTAC
TTTTCAAAAAGTGGGTTCTTCAAAAATGAAGAGCGTTGATGTGCGCTTTGTTTGTGCTACCAACCGTGATCCTTGGAAAG
AAGTACAAGAAGGTCGCTTTAGAGAAGATTTATACTATCGTTTATACGTGATTCCTCTGCACTTGCCGCCACTGCGTGAG
CGTGGGGAAGATGTTATTGAAATTGCGTACTCGCTGCTGGGCTATATGTCTGTTGAGGAAGGTAAGGCTTTTGTGCGTTT
TGCTCAGGAAGTCCTGGATCGCTTTAATCAATACGAGTGGCCGGGTAACGTTCGTCAGCTACAAAACGTATTACGAAATG
TGGTGGTATTGAATAATGGTAAAGAGATTACTCTGAACATGCTTCCGCCCCCATTGAATCAACCGATTGAAAACAGTCTG
CGACTGAAAGAGAAGCAGAATGAAGACATCACGGTAAAAGATATTTTCCCATTGTGGATCACTGAGAAAACGGCAATCGA
ACAGGCCATAAAAGCGTGTGATGGCAACATCCCACGCGCGGCAGGTTTCTTGGATGTCAGTCCATCGACGATTTACCGTA
AATTGCAAACGTGGAATGCGAAGCAGTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

96.97

0.838
  pilR Pseudomonas aeruginosa PAK

38.393

96.97

0.372

Multiple sequence alignment