Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DYY94_RS04855 Genome accession   NZ_LT996890
Coordinates   954266..954862 (-) Length   198 a.a.
NCBI ID   WP_000559159.1    Uniprot ID   Q99WC3
Organism   Staphylococcus aureus isolate 24117-SCV     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 949266..959862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYY94_RS04850 - 953956..954061 (-) 106 Protein_906 hypothetical protein -
  DYY94_RS04855 recR 954266..954862 (-) 597 WP_000559159.1 recombination mediator RecR Machinery gene
  DYY94_RS04860 - 954869..955186 (-) 318 WP_001213992.1 YbaB/EbfC family nucleoid-associated protein -
  DYY94_RS04865 dnaX 955276..956973 (-) 1698 WP_001109040.1 DNA polymerase III subunit gamma/tau -
  DYY94_RS04870 - 957042..957566 (-) 525 WP_001167828.1 GNAT family N-acetyltransferase -
  DYY94_RS04875 - 957704..957805 (-) 102 WP_001790661.1 hypothetical protein -
  DYY94_RS04885 treR 958209..958937 (-) 729 WP_001118671.1 trehalose operon repressor -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22072.49 Da        Isoelectric Point: 4.7564

>NTDB_id=1035147 DYY94_RS04855 WP_000559159.1 954266..954862(-) (recR) [Staphylococcus aureus isolate 24117-SCV]
MHYPEPISKLIDSFMKLPGIGPKTAQRLAFHTLDMKEDDVVQFAKALVDVKRELTYCSVCGHITENDPCYICEDKQRDRS
VICVVEDDKDVIAMEKMREYKGLYHVLHGSISPMDGIGPEDINIPSLIERLKSDEVSELILAMNPNLEGESTAMYISRLV
KPIGIKVTRLAQGLSVGGDLEYADEVTLSKAIAGRTEM

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1035147 DYY94_RS04855 WP_000559159.1 954266..954862(-) (recR) [Staphylococcus aureus isolate 24117-SCV]
ATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACG
TCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAAT
TAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTTATATTTGTGAAGATAAGCAAAGAGATCGTTCA
GTTATTTGTGTTGTGGAAGATGACAAAGATGTCATAGCTATGGAAAAAATGAGAGAATACAAAGGTTTATATCACGTTTT
ACATGGGTCTATTTCGCCTATGGATGGCATTGGACCAGAAGATATTAATATTCCTTCATTGATTGAACGCTTAAAAAGCG
ATGAAGTTAGCGAATTAATCTTAGCTATGAACCCGAACTTAGAGGGGGAATCTACAGCCATGTATATTTCTAGATTAGTT
AAGCCTATAGGTATCAAAGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAAC
TTTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q99WC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

77.273

100

0.773
  recR Streptococcus pneumoniae R6

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475