Detailed information NTG1035040

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB9Q07_RS10580
• Genome accession: NZ_CP166703
• Coordinates: 2197798..2198598 (-)
• Length: 266 a.a.
• NCBI ID: WP_049093658.1
• Uniprot ID: -
• Organism: Klebsiella quasipneumoniae strain INFB6138
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2192798..2203598

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB9Q07_RS10560 (AB9Q07_10560)	dksA	2193378..2193833 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
AB9Q07_RS10565 (AB9Q07_10565)	sfsA	2193996..2194712 (-)	717	WP_087833096.1	DNA/RNA nuclease SfsA	-
AB9Q07_RS10570 (AB9Q07_10570)	thpR	2194712..2195248 (-)	537	WP_004204405.1	RNA 2',3'-cyclic phosphodiesterase	-
AB9Q07_RS10575 (AB9Q07_10575)	hrpB	2195321..2197750 (+)	2430	WP_370685517.1	ATP-dependent helicase HrpB	-
AB9Q07_RS10580 (AB9Q07_10580)	pilD	2197798..2198598 (-)	801	WP_049093658.1	A24 family peptidase	Machinery gene
AB9Q07_RS10585 (AB9Q07_10585)	-	2198613..2199341 (-)	729	WP_305216639.1	type II secretion system protein N	-
AB9Q07_RS10590 (AB9Q07_10590)	-	2199331..2199816 (-)	486	WP_004204409.1	type II secretion system protein M	-
AB9Q07_RS10595 (AB9Q07_10595)	gspL	2199809..2201005 (-)	1197	WP_305216640.1	type II secretion system protein GspL	-
AB9Q07_RS10600 (AB9Q07_10600)	gspK	2200998..2201978 (-)	981	WP_004204412.1	type II secretion system minor pseudopilin GspK	-
AB9Q07_RS10605 (AB9Q07_10605)	gspJ	2201975..2202571 (-)	597	WP_032426022.1	type II secretion system minor pseudopilin GspJ	-
AB9Q07_RS10610 (AB9Q07_10610)	gspI	2202568..2202933 (-)	366	WP_114465183.1	type II secretion system minor pseudopilin GspI	-
AB9Q07_RS10615 (AB9Q07_10615)	gspH	2202930..2203445 (-)	516	WP_064187722.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29382.98 Da
• Isoelectric Point: 8.8894

>NTDB_id=1035040 AB9Q07_RS10580 WP_049093658.1 2197798..2198598(-) (pilD) [Klebsiella quasipneumoniae strain INFB6138]
MTTLAALSLHFPLIWYGFLLLFGLALGSFYNVVIYRLPRMLAQTADDEPLTLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQARISWSYPLTELTTGLLFILAGALLAPGLALAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQALPQVLLFASASGLMWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGVFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1035040 AB9Q07_RS10580 WP_049093658.1 2197798..2198598(-) (pilD) [Klebsiella quasipneumoniae strain INFB6138]
ATGACGACATTAGCCGCATTATCGCTGCATTTCCCTCTTATCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTACCGTCTGCCGCGCATGCTGGCCCAGACCGCGGACGACGAGCCGCTAACCCTCAGCA
CGCCGGGCTCATCTTGTCCGCAGTGTCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGCTTCCTCTGGCTA
GGCCGTCGCGCCCGCTGCTGTCAGGCGCGCATCTCGTGGAGCTATCCGCTGACCGAGCTGACCACCGGCCTGCTGTTTAT
CCTCGCGGGGGCGCTGCTCGCACCGGGACTGGCGCTGGCGGGCGGCCTGGTGCTGCTCTCCTTTCTGCTGATACTGGCGC
GGATTGATGCCCGGACCCAGCTGCTGCCCGATCGCCTGACCCTGCCCCTGCTGTGGGCCGGACTGCTGTTTAATCTTAAC
GAGGTGTACATTGCGCTGCCGGACGCGGTCGCCGGGGCGATGGCTGGTTATCTGGCACTGTGGTCGGTCTATTGGCTGTT
CCGCCTGCTGACCGGCAAAGAGGCTCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGCTCTGCCGCAGGTGCTGTTGTTCGCCTCGGCCAGCGGGCTGATGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGAGGGGGCGTTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.818	100	0.474
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425