Detailed information NTG1035013

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: DG169_RS13825
• Genome accession: NZ_LT992492
• Coordinates: 2937256..2937930 (-)
• Length: 224 a.a.
• NCBI ID: WP_000053959.1
• Uniprot ID: Q9KVC9
• Organism: Vibrio cholerae strain 4295STDY6534248
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2932256..2942930

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DG169_RS13790 (SAMEA4374368_02702)	-	2932436..2933215 (+)	780	WP_000042983.1	glycosyltransferase family 2 protein	-
DG169_RS13795 (SAMEA4374368_02703)	-	2933277..2934314 (-)	1038	WP_000735619.1	glycosyltransferase family 9 protein	-
DG169_RS13800 (SAMEA4374368_02704)	coaD	2934425..2934919 (+)	495	WP_000078888.1	pantetheine-phosphate adenylyltransferase	-
DG169_RS13805 (SAMEA4374368_02705)	mutM	2935016..2935825 (-)	810	WP_001114647.1	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	-
DG169_RS13810 (SAMEA4374368_02706)	-	2935835..2936317 (-)	483	WP_001266257.1	hypothetical protein	-
DG169_RS13815 (SAMEA4374368_02707)	rpmG	2936544..2936711 (-)	168	WP_001051801.1	50S ribosomal protein L33	-
DG169_RS13820 (SAMEA4374368_02708)	rpmB	2936725..2936961 (-)	237	WP_000091952.1	50S ribosomal protein L28	-
DG169_RS13825 (SAMEA4374368_02709)	radC	2937256..2937930 (-)	675	WP_000053959.1	RadC family protein	Machinery gene
DG169_RS13830 (SAMEA4374368_02710)	-	2938042..2939721 (-)	1680	WP_000953041.1	methyl-accepting chemotaxis protein	-
DG169_RS13835 (SAMEA4374368_02711)	coaBC	2939904..2941103 (+)	1200	WP_001190972.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
DG169_RS13840	-	2941169..2941306 (-)	138	WP_001889830.1	hypothetical protein	-
DG169_RS13845 (SAMEA4374368_02712)	slmA	2941262..2941852 (+)	591	WP_000918350.1	nucleoid occlusion factor SlmA	-
DG169_RS13850 (SAMEA4374368_02713)	-	2941858..2942805 (+)	948	WP_000076197.1	Kdo(2)-lipid IV(A) acyltransferase	-

Sequence

Protein

• Length: 224 a.a.
• Molecular weight: 25246.07 Da
• Isoelectric Point: 7.9636

>NTDB_id=1035013 DG169_RS13825 WP_000053959.1 2937256..2937930(-) (radC) [Vibrio cholerae strain 4295STDY6534248]
MSLKQLPTESMPREKLLQRGPQSLSDAELLAIFLRTGTQGMNVLALADLLLRDFGSLRALFCASKEQFCRHKGLGEAKFV
QLQAVLEMTQRYLAETLKRGDALTSPQQTKLYLSSVLRDRQREAFYILFLDNQHRVIRDEILFEGTIDAASVYPREVVKR
ALHHNAAAVILAHNHPSGVAEPSQADRRITDRLRDALGLVEIRVLDHFVVGDGEVVSFAERGWI

Nucleotide

• Length: 675 bp

>NTDB_id=1035013 DG169_RS13825 WP_000053959.1 2937256..2937930(-) (radC) [Vibrio cholerae strain 4295STDY6534248]
ATGAGCCTAAAACAGTTACCCACCGAATCCATGCCGCGCGAAAAATTGCTGCAACGCGGTCCACAATCATTAAGTGATGC
GGAATTGCTGGCGATTTTCCTACGTACAGGCACCCAAGGCATGAACGTGCTCGCCTTAGCTGATCTGCTGCTGCGCGATT
TTGGATCGCTGCGCGCACTGTTTTGTGCCTCCAAGGAGCAGTTTTGTCGCCACAAAGGGTTGGGCGAAGCCAAATTTGTT
CAATTACAAGCGGTATTGGAGATGACGCAGCGTTATCTCGCTGAAACCTTAAAGCGCGGTGATGCCCTCACCAGTCCGCA
GCAAACCAAACTTTATTTATCGAGCGTGCTGCGCGATCGCCAACGAGAAGCCTTCTATATATTGTTTTTGGATAACCAAC
ATCGTGTCATTCGTGATGAGATTTTATTTGAAGGGACGATTGATGCGGCGAGCGTTTACCCACGAGAAGTGGTTAAGCGG
GCGCTGCACCATAATGCCGCTGCGGTAATACTGGCACACAACCACCCATCGGGTGTTGCGGAACCGAGTCAAGCCGATCG
AAGGATCACCGATCGCCTGCGTGATGCACTCGGTTTGGTTGAGATTCGTGTGCTGGATCATTTTGTCGTCGGTGATGGGG
AAGTGGTCTCTTTTGCTGAACGTGGCTGGATATAG

Domains

Predicted by InterProScan.

• UPF0758 N-terminal (UPF0758_N) (4-79)

• RadC-like JAB domain (RadC) (104-222)

3D structure

• AlphaFold DB: Q9KVC9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	53.704	96.429	0.518
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	37.946	100	0.379