Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | AB9075_RS16260 | Genome accession | NZ_CP166681 |
| Coordinates | 3541351..3542652 (+) | Length | 433 a.a. |
| NCBI ID | WP_009893082.1 | Uniprot ID | Q2T1C5 |
| Organism | Burkholderia thailandensis strain HNBT001 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3536351..3547652
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB9075_RS16230 (AB9075_16225) | - | 3536922..3537536 (+) | 615 | WP_025369612.1 | 50S ribosomal protein L25/general stress protein Ctc | - |
| AB9075_RS16235 (AB9075_16230) | pth | 3537650..3538255 (+) | 606 | WP_009893073.1 | aminoacyl-tRNA hydrolase | - |
| AB9075_RS16240 (AB9075_16235) | hisC | 3538329..3539396 (+) | 1068 | WP_011401783.1 | histidinol-phosphate transaminase | - |
| AB9075_RS16245 (AB9075_16240) | - | 3539530..3539793 (-) | 264 | WP_009893077.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| AB9075_RS16250 (AB9075_16245) | coaD | 3539858..3540358 (-) | 501 | WP_004195249.1 | pantetheine-phosphate adenylyltransferase | - |
| AB9075_RS16255 (AB9075_16250) | rsmD | 3540467..3541093 (-) | 627 | WP_019255510.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| AB9075_RS16260 (AB9075_16255) | pilA | 3541351..3542652 (+) | 1302 | WP_009893082.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| AB9075_RS16265 (AB9075_16260) | maiA | 3542810..3543454 (-) | 645 | WP_009893084.1 | maleylacetoacetate isomerase | - |
| AB9075_RS16270 (AB9075_16265) | nirB | 3543847..3546291 (+) | 2445 | WP_009893095.1 | nitrite reductase large subunit NirB | - |
| AB9075_RS16275 (AB9075_16270) | nirD | 3546367..3546762 (+) | 396 | WP_009893098.1 | nitrite reductase small subunit NirD | - |
Sequence
Protein
Download Length: 433 a.a. Molecular weight: 45283.62 Da Isoelectric Point: 5.3487
>NTDB_id=1034930 AB9075_RS16260 WP_009893082.1 3541351..3542652(+) (pilA) [Burkholderia thailandensis strain HNBT001]
MFSFFKRFKKAPDAAPAEPQQAPDAPQDAAGESAAPEAASKAARVDAPAAPVSRGEYSEAPATERPRSDAPAPVRATPPV
SPAAATPESPAGQPSAAEAARAPSVVMTVTPAANGRNGVVETVEIVPPPAPEPAAKKSWIARLKSGLAKTSSSITNVFVN
TKIDDALYEELETALLMSDAGVDATEHLLGALREKVRTGRLTDPQQVKDALRGLLVELLTPLEQSLVLGRAQPLVMMIAG
VNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESGDPAAVIFDAVSAARARNIDVMMA
DTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIA
RQRPIPVYFIGVGEKVEDLQPFSAEEFADALLG
MFSFFKRFKKAPDAAPAEPQQAPDAPQDAAGESAAPEAASKAARVDAPAAPVSRGEYSEAPATERPRSDAPAPVRATPPV
SPAAATPESPAGQPSAAEAARAPSVVMTVTPAANGRNGVVETVEIVPPPAPEPAAKKSWIARLKSGLAKTSSSITNVFVN
TKIDDALYEELETALLMSDAGVDATEHLLGALREKVRTGRLTDPQQVKDALRGLLVELLTPLEQSLVLGRAQPLVMMIAG
VNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESGDPAAVIFDAVSAARARNIDVMMA
DTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIA
RQRPIPVYFIGVGEKVEDLQPFSAEEFADALLG
Nucleotide
Download Length: 1302 bp
>NTDB_id=1034930 AB9075_RS16260 WP_009893082.1 3541351..3542652(+) (pilA) [Burkholderia thailandensis strain HNBT001]
ATGTTCAGCTTCTTCAAACGATTCAAGAAAGCGCCCGACGCCGCACCGGCCGAGCCGCAGCAAGCGCCCGACGCGCCGCA
GGACGCGGCCGGCGAGTCGGCCGCGCCCGAGGCCGCGTCCAAGGCCGCGCGAGTCGACGCGCCCGCTGCGCCGGTCTCGC
GCGGCGAGTACAGCGAAGCGCCGGCTACCGAACGGCCCCGTTCCGACGCGCCGGCCCCCGTTCGCGCGACACCGCCCGTC
TCCCCCGCAGCAGCGACGCCGGAATCGCCGGCCGGGCAGCCGTCCGCCGCCGAAGCGGCGCGCGCGCCGTCCGTCGTGAT
GACGGTGACGCCGGCCGCCAACGGCCGCAACGGCGTCGTCGAGACGGTCGAGATCGTGCCGCCGCCCGCGCCCGAGCCGG
CCGCGAAGAAATCGTGGATCGCGCGGCTGAAGTCCGGCCTCGCGAAGACGAGCTCGAGCATCACGAACGTGTTCGTGAAC
ACGAAGATCGACGACGCGCTCTACGAGGAGCTCGAGACGGCGCTGCTGATGTCCGACGCCGGCGTCGACGCGACCGAGCA
TCTGCTCGGCGCGCTGCGCGAGAAGGTGCGCACGGGCCGCCTCACCGATCCGCAACAGGTGAAGGACGCGCTGCGCGGCC
TGCTCGTCGAGTTGCTGACGCCGCTCGAGCAGTCGCTCGTGCTCGGCCGCGCGCAGCCGCTCGTGATGATGATCGCGGGC
GTGAACGGCGCGGGCAAGACGACGAGCATCGGCAAGCTCGCGAAGCATCTGCAGAGCTTCGATCAATCGGTGCTGCTCGC
CGCCGGCGACACGTTCCGCGCGGCCGCGCGCGAGCAGCTCGCGATCTGGGGCGAGCGCAACAACGTGACCGTCGTCCAGC
AGGAAAGCGGCGATCCGGCCGCGGTGATTTTCGATGCGGTCAGCGCCGCGCGCGCGCGCAACATCGACGTGATGATGGCC
GACACCGCGGGCCGCCTGCCGACGCAGCTGCATCTGATGGAAGAGCTCCGAAAGGTGAAGCGCGTGATCGGCAAGGCGCA
CGACGGCGCGCCGCACGAAGTGCTGCTCGTGATCGACGCGAACACCGGCCAGAACGCGCTCGCGCAGGTGAAGGCCTTCG
ACGACGCGCTCGGCCTCACGGGCCTCATCGTCACGAAGCTCGACGGCACCGCGAAGGGCGGCATCCTCGCCGCGATCGCG
CGCCAGCGGCCGATTCCGGTGTACTTCATCGGCGTCGGCGAGAAGGTCGAGGATCTGCAGCCGTTCAGCGCGGAGGAATT
CGCGGACGCGCTGCTCGGATAA
ATGTTCAGCTTCTTCAAACGATTCAAGAAAGCGCCCGACGCCGCACCGGCCGAGCCGCAGCAAGCGCCCGACGCGCCGCA
GGACGCGGCCGGCGAGTCGGCCGCGCCCGAGGCCGCGTCCAAGGCCGCGCGAGTCGACGCGCCCGCTGCGCCGGTCTCGC
GCGGCGAGTACAGCGAAGCGCCGGCTACCGAACGGCCCCGTTCCGACGCGCCGGCCCCCGTTCGCGCGACACCGCCCGTC
TCCCCCGCAGCAGCGACGCCGGAATCGCCGGCCGGGCAGCCGTCCGCCGCCGAAGCGGCGCGCGCGCCGTCCGTCGTGAT
GACGGTGACGCCGGCCGCCAACGGCCGCAACGGCGTCGTCGAGACGGTCGAGATCGTGCCGCCGCCCGCGCCCGAGCCGG
CCGCGAAGAAATCGTGGATCGCGCGGCTGAAGTCCGGCCTCGCGAAGACGAGCTCGAGCATCACGAACGTGTTCGTGAAC
ACGAAGATCGACGACGCGCTCTACGAGGAGCTCGAGACGGCGCTGCTGATGTCCGACGCCGGCGTCGACGCGACCGAGCA
TCTGCTCGGCGCGCTGCGCGAGAAGGTGCGCACGGGCCGCCTCACCGATCCGCAACAGGTGAAGGACGCGCTGCGCGGCC
TGCTCGTCGAGTTGCTGACGCCGCTCGAGCAGTCGCTCGTGCTCGGCCGCGCGCAGCCGCTCGTGATGATGATCGCGGGC
GTGAACGGCGCGGGCAAGACGACGAGCATCGGCAAGCTCGCGAAGCATCTGCAGAGCTTCGATCAATCGGTGCTGCTCGC
CGCCGGCGACACGTTCCGCGCGGCCGCGCGCGAGCAGCTCGCGATCTGGGGCGAGCGCAACAACGTGACCGTCGTCCAGC
AGGAAAGCGGCGATCCGGCCGCGGTGATTTTCGATGCGGTCAGCGCCGCGCGCGCGCGCAACATCGACGTGATGATGGCC
GACACCGCGGGCCGCCTGCCGACGCAGCTGCATCTGATGGAAGAGCTCCGAAAGGTGAAGCGCGTGATCGGCAAGGCGCA
CGACGGCGCGCCGCACGAAGTGCTGCTCGTGATCGACGCGAACACCGGCCAGAACGCGCTCGCGCAGGTGAAGGCCTTCG
ACGACGCGCTCGGCCTCACGGGCCTCATCGTCACGAAGCTCGACGGCACCGCGAAGGGCGGCATCCTCGCCGCGATCGCG
CGCCAGCGGCCGATTCCGGTGTACTTCATCGGCGTCGGCGAGAAGGTCGAGGATCTGCAGCCGTTCAGCGCGGAGGAATT
CGCGGACGCGCTGCTCGGATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
50.227 |
100 |
0.51 |