Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AB6K15_RS15035 Genome accession   NZ_CP166492
Coordinates   3078512..3079156 (+) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain BC248L1-1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3073512..3084156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6K15_RS15010 (AB6K15_15010) - 3073963..3074304 (-) 342 WP_007408677.1 hypothetical protein -
  AB6K15_RS15015 (AB6K15_15015) degQ 3074767..3074907 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  AB6K15_RS15020 (AB6K15_15020) - 3075115..3075975 (+) 861 WP_157774448.1 polyprenyl synthetase family protein -
  AB6K15_RS15025 (AB6K15_15025) comX 3075944..3076117 (+) 174 WP_012118314.1 competence pheromone ComX -
  AB6K15_RS15030 (AB6K15_15030) comP 3076131..3078431 (+) 2301 WP_124935036.1 histidine kinase Regulator
  AB6K15_RS15035 (AB6K15_15035) comA 3078512..3079156 (+) 645 WP_003152052.1 response regulator transcription factor Regulator
  AB6K15_RS15040 (AB6K15_15040) - 3079178..3079561 (+) 384 WP_012118312.1 hotdog fold thioesterase -
  AB6K15_RS15045 (AB6K15_15045) mnhG 3079601..3079975 (-) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  AB6K15_RS15050 (AB6K15_15050) - 3079959..3080243 (-) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  AB6K15_RS15055 (AB6K15_15055) - 3080243..3080719 (-) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  AB6K15_RS15060 (AB6K15_15060) - 3080725..3082206 (-) 1482 WP_007408671.1 Na+/H+ antiporter subunit D -
  AB6K15_RS15065 (AB6K15_15065) - 3082199..3082540 (-) 342 WP_015418102.1 Na(+)/H(+) antiporter subunit C -
  AB6K15_RS15070 (AB6K15_15070) - 3082540..3082971 (-) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=1034760 AB6K15_RS15035 WP_003152052.1 3078512..3079156(+) (comA) [Bacillus velezensis strain BC248L1-1]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1034760 AB6K15_RS15035 WP_003152052.1 3078512..3079156(+) (comA) [Bacillus velezensis strain BC248L1-1]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGACAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment