Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   AB6K15_RS12120 Genome accession   NZ_CP166492
Coordinates   2502086..2502205 (-) Length   39 a.a.
NCBI ID   WP_007407639.1    Uniprot ID   A3KLD5
Organism   Bacillus velezensis strain BC248L1-1     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 2497086..2507205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6K15_RS12080 (AB6K15_12080) speE 2497487..2498317 (+) 831 WP_003151052.1 spermidine synthase -
  AB6K15_RS12085 (AB6K15_12085) speB 2498376..2499248 (+) 873 WP_007614448.1 agmatinase -
  AB6K15_RS12090 (AB6K15_12090) - 2499416..2499634 (+) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  AB6K15_RS12095 (AB6K15_12095) - 2500225..2500737 (-) 513 WP_094031368.1 stage II sporulation protein M -
  AB6K15_RS12100 (AB6K15_12100) - 2500781..2501062 (-) 282 WP_007407643.1 hypothetical protein -
  AB6K15_RS12105 (AB6K15_12105) - 2501248..2501433 (-) 186 WP_007407642.1 DUF4177 domain-containing protein -
  AB6K15_RS12110 (AB6K15_12110) - 2501468..2501671 (-) 204 WP_007407641.1 hypothetical protein -
  AB6K15_RS12115 (AB6K15_12115) - 2501685..2501888 (-) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  AB6K15_RS12120 (AB6K15_12120) phrF 2502086..2502205 (-) 120 WP_007407639.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  AB6K15_RS12125 (AB6K15_12125) rapF 2502189..2503334 (-) 1146 WP_007407638.1 tetratricopeptide repeat protein Regulator
  AB6K15_RS12130 (AB6K15_12130) - 2503565..2504920 (+) 1356 WP_015240776.1 YncE family protein -
  AB6K15_RS12135 (AB6K15_12135) - 2504960..2506336 (+) 1377 WP_094031367.1 YncE family protein -
  AB6K15_RS12140 (AB6K15_12140) - 2506343..2506855 (-) 513 Protein_2341 bacteriocin biosynthesis protein AlbG -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4295.19 Da        Isoelectric Point: 10.0233

>NTDB_id=1034747 AB6K15_RS12120 WP_007407639.1 2502086..2502205(-) (phrF) [Bacillus velezensis strain BC248L1-1]
MKLKYKLALTCLAISTVFVSAEIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=1034747 AB6K15_RS12120 WP_007407639.1 2502086..2502205(-) (phrF) [Bacillus velezensis strain BC248L1-1]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGAAATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLD5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462

Multiple sequence alignment